RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RTL1A6NKG5 1358 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CASP8AP2Q9UKL3 1982 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 IQCA1LA6NCM1 817 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 SOX10P56693 466 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CABP4P57796 275 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 MAP1SQ66K74 1059 aaPredicted RBP6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CYP4F22Q6NT55 531 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CNTROBQ8N137 903 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CCDC24Q8N4L8 307 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 GPR101Q96P66 508 aaPredicted RBP6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CARD11Q9BXL7 1154 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 TAF1DQ9H5J8 278 aaPredicted RBP6.69□□□□□ -1.34
LIMS1-214ENST00000542845 COL5A3P25940 1745 aaPredicted RBP6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CNTNAP4Q9C0A0 1308 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 INSRP06213 1382 aa6.69□□□□□ -1.34
LIMS1-214ENST00000542845 CACNA1SQ13698 1873 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 RASSF10A6NK89 507 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 FYB1O15117 783 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 AOC2O75106 756 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 NUBP1P53384 320 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 FMR1Q06787 632 aaKnown RBP eCLIP6.68□□□□□ -1.34
LIMS1-214ENST00000542845 CAPNS2Q96L46 248 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 EMILIN1Q9Y6C2 1016 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 STK24Q9Y6E0 443 aa6.68□□□□□ -1.34
LIMS1-214ENST00000542845 NPHP1O15259 732 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 NFIXQ14938 502 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 SIN3AQ96ST3 1273 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 EYA1Q99502 592 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 TAOK3Q9H2K8 898 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 HACL1Q9UJ83 578 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 FLT4P35916 1363 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 KDRP35968 1356 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 DLEC1Q9Y238 1755 aa6.67□□□□□ -1.34
LIMS1-214ENST00000542845 SCN4AP35499 1836 aa6.66□□□□□ -1.34
LIMS1-214ENST00000542845 ERVV-2B6SEH9 535 aa6.66□□□□□ -1.34
LIMS1-214ENST00000542845 EPHX2P34913 555 aa6.66□□□□□ -1.34
LIMS1-214ENST00000542845 ECE1P42892 770 aa6.66□□□□□ -1.34
LIMS1-214ENST00000542845 INTS5Q6P9B9 1019 aaKnown RBP6.66□□□□□ -1.34
LIMS1-214ENST00000542845 NFATC2IPQ8NCF5 419 aa6.66□□□□□ -1.34
LIMS1-214ENST00000542845 FER1L6Q2WGJ9 1857 aa6.66□□□□□ -1.34
LIMS1-214ENST00000542845 PNMA8AQ86V59 439 aaPredicted RBP6.65□□□□□ -1.34
LIMS1-214ENST00000542845 DDX21Q9NR30 783 aaKnown RBP eCLIP6.65□□□□□ -1.34
LIMS1-214ENST00000542845 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.65□□□□□ -1.34
LIMS1-214ENST00000542845 RNF123Q5XPI4 1314 aa6.65□□□□□ -1.35
LIMS1-214ENST00000542845 CARMIL3Q8ND23 1372 aa6.65□□□□□ -1.35
LIMS1-214ENST00000542845 TNRC18O15417 2968 aaPredicted RBP6.65□□□□□ -1.35
LIMS1-214ENST00000542845 ST20-MTHFSA0A0A6YYL1 179 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 CANXP27824 592 aaKnown RBP6.64□□□□□ -1.35
LIMS1-214ENST00000542845 PDE6BP35913 854 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 MTHFSP49914 203 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 LCE2DQ5TA82 110 aaPredicted RBP6.64□□□□□ -1.35
LIMS1-214ENST00000542845 PRPF38BQ5VTL8 546 aaKnown RBP6.64□□□□□ -1.35
LIMS1-214ENST00000542845 ZNF530Q6P9A1 599 aaPredicted RBP6.64□□□□□ -1.35
LIMS1-214ENST00000542845 DNAJC10Q8IXB1 793 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 RYDENQ9NUL5 291 aaKnown RBP6.64□□□□□ -1.35
LIMS1-214ENST00000542845 NARFQ9UHQ1 456 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 ZNF330Q9Y3S2 320 aaPredicted RBP6.64□□□□□ -1.35
LIMS1-214ENST00000542845 GJA3Q9Y6H8 435 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 ZNF541Q9H0D2 1346 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 ZNF831Q5JPB2 1677 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 SLX4Q8IY92 1834 aa6.64□□□□□ -1.35
LIMS1-214ENST00000542845 TRAF5O00463 557 aa6.63□□□□□ -1.35
LIMS1-214ENST00000542845 GTPBP6O43824 516 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-214ENST00000542845 HSP90AB1P08238 724 aaKnown RBP6.63□□□□□ -1.35
LIMS1-214ENST00000542845 TNNT2P45379 298 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-214ENST00000542845 PLEKHO1Q53GL0 409 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-214ENST00000542845 L3MBTL3Q96JM7 780 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-214ENST00000542845 KIF20BQ96Q89 1820 aa6.63□□□□□ -1.35
LIMS1-214ENST00000542845 PHF12Q96QT6 1004 aa6.63□□□□□ -1.35
LIMS1-214ENST00000542845 BCL2L12Q9HB09 334 aa6.63□□□□□ -1.35
LIMS1-214ENST00000542845 ZNF277Q9NRM2 450 aaPredicted RBP6.63□□□□□ -1.35
LIMS1-214ENST00000542845 ANKRD31Q8N7Z5 1873 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 TJP1Q07157 1748 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 TONSLQ96HA7 1378 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 LTBP3Q9NS15 1303 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.62□□□□□ -1.35
LIMS1-214ENST00000542845 PYGBP11216 843 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 MAP2K2P36507 400 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 C1orf141Q5JVX7 400 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 CST9Q5W186 159 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 TBC1D9BQ66K14 1250 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 CIAPIN1Q6FI81 312 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 PRPF40BQ6NWY9 871 aaKnown RBP6.62□□□□□ -1.35
LIMS1-214ENST00000542845 CNKSR1Q969H4 720 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 ZFP91Q96JP5 570 aaPredicted RBP6.62□□□□□ -1.35
LIMS1-214ENST00000542845 BRIP1Q9BX63 1249 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 ZNF408Q9H9D4 720 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 TRPM7Q96QT4 1865 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 NRXN2Q9P2S2 1712 aa6.62□□□□□ -1.35
LIMS1-214ENST00000542845 ADAMTS7Q9UKP4 1686 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 COL15A1P39059 1388 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 SOS1Q07889 1333 aaPredicted RBP6.61□□□□□ -1.35
LIMS1-214ENST00000542845 CA12O43570 354 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 CYP19A1P11511 503 aaPredicted RBP6.61□□□□□ -1.35
LIMS1-214ENST00000542845 LMOD1P29536 600 aaPredicted RBP6.61□□□□□ -1.35
LIMS1-214ENST00000542845 SLC39A6Q13433 755 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 SOGA3Q5TF21 947 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 PRR5LQ6MZQ0 368 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 OLFM4Q6UX06 510 aa6.61□□□□□ -1.35
LIMS1-214ENST00000542845 PUS7Q96PZ0 661 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms