RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 GOLGA6L22H0YM25 854 aa12.02□□□□□ -0.49
SS18-205ENST00000542420 NKX1-1Q15270 411 aaPredicted RBP12.02□□□□□ -0.49
SS18-205ENST00000542420 CLASRPQ8N2M8 674 aaKnown RBP12.02□□□□□ -0.49
SS18-205ENST00000542420 TNPO1Q92973 898 aaKnown RBP12.02□□□□□ -0.49
SS18-205ENST00000542420 INTS4Q96HW7 963 aaKnown RBP12.02□□□□□ -0.49
SS18-205ENST00000542420 ERVV-2B6SEH9 535 aa12.01□□□□□ -0.49
SS18-205ENST00000542420 CD2BP2O95400 341 aaKnown RBP12.01□□□□□ -0.49
SS18-205ENST00000542420 METTL22Q9BUU2 404 aaPredicted RBP12.01□□□□□ -0.49
SS18-205ENST00000542420 LRP6O75581 1613 aa12.01□□□□□ -0.49
SS18-205ENST00000542420 RFX7Q2KHR2 1363 aa12.01□□□□□ -0.49
SS18-205ENST00000542420 HIP1O00291 1037 aa12□□□□□ -0.49
SS18-205ENST00000542420 TRAK2O60296 914 aa12□□□□□ -0.49
SS18-205ENST00000542420 CYP2E1P05181 493 aaPredicted RBP12□□□□□ -0.49
SS18-205ENST00000542420 BRINP3Q76B58 766 aa12□□□□□ -0.49
SS18-205ENST00000542420 TTC5Q8N0Z6 440 aa12□□□□□ -0.49
SS18-205ENST00000542420 RUFY2Q8WXA3 655 aa12□□□□□ -0.49
SS18-205ENST00000542420 PODXL2Q9NZ53 605 aa12□□□□□ -0.49
SS18-205ENST00000542420 CSB-PGBD3P0DP91 1061 aa12□□□□□ -0.49
SS18-205ENST00000542420 LRP10Q7Z4F1 713 aa12□□□□□ -0.49
SS18-205ENST00000542420 TNS2Q63HR2 1409 aa12□□□□□ -0.49
SS18-205ENST00000542420 WNK3Q9BYP7 1800 aa12□□□□□ -0.49
SS18-205ENST00000542420 RAD50Q92878 1312 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 KCPQ6ZWJ8 1503 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 TRIM6-TRIM34B2RNG4 842 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 CUL4AQ13619 759 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 RBM42Q9BTD8 480 aaKnown RBP11.99□□□□□ -0.49
SS18-205ENST00000542420 COL22A1Q8NFW1 1626 aaPredicted RBP11.99□□□□□ -0.49
SS18-205ENST00000542420 TJP1Q07157 1748 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 FSD2A1L4K1 749 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 CYP27B1O15528 508 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 SGSM2O43147 1006 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 HSPA4P34932 840 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 PROSER3Q2NL68 480 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 SNRKQ9NRH2 765 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 ECHDC1Q9NTX5 307 aa11.99□□□□□ -0.49
SS18-205ENST00000542420 SPEF2Q9C093 1822 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 COL14A1Q05707 1796 aaKnown RBP11.98□□□□□ -0.49
SS18-205ENST00000542420 NEURL1BA8MQ27 555 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 CARD10Q9BWT7 1032 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 GLIPR1L2Q4G1C9 344 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 RIC3Q7Z5B4 369 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 VSIG10Q8N0Z9 540 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 SPRYD3Q8NCJ5 442 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 RILPL2Q969X0 211 aa11.98□□□□□ -0.49
SS18-205ENST00000542420 GCKRQ14397 625 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 NFATC2IPQ8NCF5 419 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 KCNB2Q92953 911 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 EVI5LQ96CN4 794 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 IGKV5-2P06315 115 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 CABP4P57796 275 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 G3BP1Q13283 466 aaKnown RBP eCLIP11.97□□□□□ -0.49
SS18-205ENST00000542420 OS9Q13438 667 aaPredicted RBP11.97□□□□□ -0.49
SS18-205ENST00000542420 RABL6Q3YEC7 729 aaPredicted RBP11.97□□□□□ -0.49
SS18-205ENST00000542420 PLBD2Q8NHP8 589 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 SUCLG2Q96I99 432 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 ZNF496Q96IT1 587 aaPredicted RBP11.97□□□□□ -0.49
SS18-205ENST00000542420 IL1RAPL2Q9NP60 686 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 COPRSQ9NQ92 184 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 TOGARAM1Q9Y4F4 1720 aa11.97□□□□□ -0.49
SS18-205ENST00000542420 ANKRD13DQ6ZTN6 518 aa11.96□□□□□ -0.49
SS18-205ENST00000542420 ANXA1P04083 346 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 IFIT2P09913 472 aaKnown RBP11.95□□□□□ -0.5
SS18-205ENST00000542420 NUTM1Q86Y26 1132 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 ZCRB1Q8TBF4 217 aaKnown RBP11.95□□□□□ -0.5
SS18-205ENST00000542420 KAZALD1Q96I82 304 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 ANO2Q9NQ90 1003 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 PDIA4P13667 645 aaKnown RBP11.95□□□□□ -0.5
SS18-205ENST00000542420 XAGE3Q8WTP9 111 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 TM6SF1Q9BZW5 370 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 SLAIN2Q9P270 581 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 ITGB4P16144 1822 aa11.95□□□□□ -0.5
SS18-205ENST00000542420 AHDC1Q5TGY3 1603 aaPredicted RBP11.94□□□□□ -0.5
SS18-205ENST00000542420 GOLGA6L3A6NEY3 463 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 CWF19L2Q2TBE0 894 aaKnown RBP11.94□□□□□ -0.5
SS18-205ENST00000542420 KIAA1211Q6ZU35 1233 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 UNC5CLQ8IV45 518 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 KLHL34Q8N239 644 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 LSG1Q9H089 658 aaKnown RBP11.94□□□□□ -0.5
SS18-205ENST00000542420 BICC1Q9H694 974 aaKnown RBP11.94□□□□□ -0.5
SS18-205ENST00000542420 JCADQ9P266 1359 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 ANKRD36CQ5JPF3 1778 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 PRAMEF22A3QJZ6 481 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 BAG4O95429 457 aaKnown RBP11.94□□□□□ -0.5
SS18-205ENST00000542420 MRE11P49959 708 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 NEK4P51957 841 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 KLHL40Q2TBA0 621 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 COPS6Q7L5N1 327 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 PRDM11Q9NQV5 511 aa11.94□□□□□ -0.5
SS18-205ENST00000542420 IL2RBP14784 551 aa11.93□□□□□ -0.5
SS18-205ENST00000542420 SLC39A6Q13433 755 aa11.93□□□□□ -0.5
SS18-205ENST00000542420 TMX3Q96JJ7 454 aa11.93□□□□□ -0.5
SS18-205ENST00000542420 CICQ96RK0 1608 aaPredicted RBP11.93□□□□□ -0.5
SS18-205ENST00000542420 GPR108Q9NPR9 543 aa11.93□□□□□ -0.5
SS18-205ENST00000542420 DIAPH3Q9NSV4 1193 aa11.93□□□□□ -0.5
SS18-205ENST00000542420 SSFA2P28290 1259 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 CHRNA2Q15822 529 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 TSHZ3Q63HK5 1081 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 CABLES1Q8TDN4 633 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 DDX17Q92841 729 aaKnown RBP11.92□□□□□ -0.5
SS18-205ENST00000542420 TEX13AQ9BXU3 409 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms