RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 U2AF2P26368 475 aaKnown RBP eCLIP13.37□□□□□ -0.27
CDH3-203ENST00000542274 TNPO1Q92973 898 aaKnown RBP13.37□□□□□ -0.27
CDH3-203ENST00000542274 TRAK2O60296 914 aa13.36□□□□□ -0.27
CDH3-203ENST00000542274 GCP02774 474 aa13.36□□□□□ -0.27
CDH3-203ENST00000542274 ZC3H6P61129 1189 aaKnown RBP13.36□□□□□ -0.27
CDH3-203ENST00000542274 ALS2Q96Q42 1657 aa13.36□□□□□ -0.27
CDH3-203ENST00000542274 NCOA3Q9Y6Q9 1424 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 MTHFSDQ2M296 383 aaKnown RBP13.35□□□□□ -0.27
CDH3-203ENST00000542274 PDCL2Q8N4E4 241 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 MED4Q9NPJ6 270 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 DDX19BQ9UMR2 479 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 RGPD5Q99666 1765 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 ERICH4A6NGS2 130 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 ALDH1L2Q3SY69 923 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 BRINP3Q76B58 766 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 RWDD1Q9H446 243 aaPredicted RBP13.35□□□□□ -0.27
CDH3-203ENST00000542274 ZBTB40Q9NUA8 1239 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 ARHGEF10O15013 1369 aa13.35□□□□□ -0.27
CDH3-203ENST00000542274 CCT2P78371 535 aaKnown RBP13.34□□□□□ -0.27
CDH3-203ENST00000542274 LRRC59Q96AG4 307 aaKnown RBP13.34□□□□□ -0.27
CDH3-203ENST00000542274 IGSF1Q8N6C5 1336 aa13.34□□□□□ -0.27
CDH3-203ENST00000542274 MED1Q15648 1581 aaPredicted RBP13.34□□□□□ -0.27
CDH3-203ENST00000542274 RPS6KL1Q9Y6S9 549 aa13.34□□□□□ -0.27
CDH3-203ENST00000542274 MCM4P33991 863 aa13.33□□□□□ -0.27
CDH3-203ENST00000542274 RBM5P52756 815 aaKnown RBP eCLIP13.33□□□□□ -0.27
CDH3-203ENST00000542274 KCNH5Q8NCM2 988 aa13.33□□□□□ -0.27
CDH3-203ENST00000542274 IP6K1Q92551 441 aa13.33□□□□□ -0.27
CDH3-203ENST00000542274 CXorf56Q9H5V9 222 aa13.33□□□□□ -0.27
CDH3-203ENST00000542274 NOL7Q9UMY1 257 aaKnown RBP13.33□□□□□ -0.27
CDH3-203ENST00000542274 SLIT3O75094 1523 aa13.33□□□□□ -0.28
CDH3-203ENST00000542274 USP19O94966 1318 aa13.33□□□□□ -0.28
CDH3-203ENST00000542274 NPHP3Q7Z494 1330 aa13.33□□□□□ -0.28
CDH3-203ENST00000542274 PPP1R12AO14974 1030 aaPredicted RBP13.33□□□□□ -0.28
CDH3-203ENST00000542274 MNS1Q8NEH6 495 aa13.33□□□□□ -0.28
CDH3-203ENST00000542274 RASSF4Q9H2L5 321 aa13.33□□□□□ -0.28
CDH3-203ENST00000542274 SLAIN2Q9P270 581 aa13.33□□□□□ -0.28
CDH3-203ENST00000542274 RAD51AP2Q09MP3 1159 aa13.32□□□□□ -0.28
CDH3-203ENST00000542274 ARHGEF25Q86VW2 580 aa13.32□□□□□ -0.28
CDH3-203ENST00000542274 GAS2L3Q86XJ1 694 aa13.32□□□□□ -0.28
CDH3-203ENST00000542274 AXIN2Q9Y2T1 843 aa13.32□□□□□ -0.28
CDH3-203ENST00000542274 PXDNQ92626 1479 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 KLHL33A6NCF5 533 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 C1QTNF12Q5T7M4 302 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 FEZ1Q99689 392 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 OGFRQ9NZT2 677 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 RTL1A6NKG5 1358 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 ZBTB7BO15156 539 aaPredicted RBP13.31□□□□□ -0.28
CDH3-203ENST00000542274 GYS2P54840 703 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.31□□□□□ -0.28
CDH3-203ENST00000542274 KDRP35968 1356 aa13.31□□□□□ -0.28
CDH3-203ENST00000542274 TERF2Q15554 542 aa13.3□□□□□ -0.28
CDH3-203ENST00000542274 ARHGEF1Q92888 912 aaKnown RBP13.3□□□□□ -0.28
CDH3-203ENST00000542274 TNS3Q68CZ2 1445 aa13.3□□□□□ -0.28
CDH3-203ENST00000542274 KIF24Q5T7B8 1368 aa13.3□□□□□ -0.28
CDH3-203ENST00000542274 PPP2R5AQ15172 486 aa13.3□□□□□ -0.28
CDH3-203ENST00000542274 CHRNA2Q15822 529 aa13.3□□□□□ -0.28
CDH3-203ENST00000542274 PHRF1Q9P1Y6 1649 aaKnown RBP13.29□□□□□ -0.28
CDH3-203ENST00000542274 CHL1O00533 1208 aa13.29□□□□□ -0.28
CDH3-203ENST00000542274 HS1BP3Q53T59 392 aa13.29□□□□□ -0.28
CDH3-203ENST00000542274 LNPKQ9C0E8 428 aa13.29□□□□□ -0.28
CDH3-203ENST00000542274 HDAC1Q13547 482 aaPredicted RBP13.29□□□□□ -0.28
CDH3-203ENST00000542274 FAM177BA6PVY3 158 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 GTF2F1P35269 517 aaKnown RBP eCLIP13.28□□□□□ -0.28
CDH3-203ENST00000542274 SIRT2Q8IXJ6 389 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 ANKRD24Q8TF21 1146 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 ANTXR1Q9H6X2 564 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 SPATA31A3Q5VYP0 1347 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 CRB1P82279 1406 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 SCP2P22307 547 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 JMYQ8N9B5 988 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 CCDC97Q96F63 343 aaPredicted RBP13.28□□□□□ -0.28
CDH3-203ENST00000542274 TSPAN18Q96SJ8 248 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 NBPF3Q9H094 633 aa13.28□□□□□ -0.28
CDH3-203ENST00000542274 CALRP27797 417 aaKnown RBP13.27□□□□□ -0.28
CDH3-203ENST00000542274 DRC1Q96MC2 740 aa13.27□□□□□ -0.28
CDH3-203ENST00000542274 PAIP2Q9BPZ3 127 aaKnown RBP13.27□□□□□ -0.28
CDH3-203ENST00000542274 RBM25P49756 843 aaKnown RBP13.27□□□□□ -0.29
CDH3-203ENST00000542274 SMC5Q8IY18 1101 aa13.27□□□□□ -0.29
CDH3-203ENST00000542274 EXOC8Q8IYI6 725 aa13.27□□□□□ -0.29
CDH3-203ENST00000542274 ABCC4O15439 1325 aa13.27□□□□□ -0.29
CDH3-203ENST00000542274 G2E3Q7L622 706 aa13.26□□□□□ -0.29
CDH3-203ENST00000542274 TSPYL4Q9UJ04 414 aa13.26□□□□□ -0.29
CDH3-203ENST00000542274 NASPP49321 788 aaPredicted RBP13.26□□□□□ -0.29
CDH3-203ENST00000542274 SART3Q15020 963 aaKnown RBP13.26□□□□□ -0.29
CDH3-203ENST00000542274 RTF1Q92541 710 aaKnown RBP13.26□□□□□ -0.29
CDH3-203ENST00000542274 FAM210AQ96ND0 272 aa13.26□□□□□ -0.29
CDH3-203ENST00000542274 BCL2L12Q9HB09 334 aa13.26□□□□□ -0.29
CDH3-203ENST00000542274 CRYBG1Q9Y4K1 1723 aa13.26□□□□□ -0.29
CDH3-203ENST00000542274 COQ9O75208 318 aa13.25□□□□□ -0.29
CDH3-203ENST00000542274 C11orf91Q3C1V1 193 aa13.25□□□□□ -0.29
CDH3-203ENST00000542274 F6X3S4 739 aa13.25□□□□□ -0.29
CDH3-203ENST00000542274 HNRNPH2P55795 449 aaKnown RBP13.25□□□□□ -0.29
CDH3-203ENST00000542274 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.25□□□□□ -0.29
CDH3-203ENST00000542274 ZKSCAN5Q9Y2L8 839 aa13.25□□□□□ -0.29
CDH3-203ENST00000542274 KIAA0232Q92628 1395 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 SLC4A2P04920 1241 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 PAX7P23759 505 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 ARHGAP45Q92619 1136 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 PRIMPOLQ96LW4 560 aa13.24□□□□□ -0.29
CDH3-203ENST00000542274 KDM4CQ9H3R0 1056 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms