RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 KRT76Q01546 638 aa6.04□□□□□ -1.44
USP28-210ENST00000542033 GAS6Q14393 721 aa6.04□□□□□ -1.44
USP28-210ENST00000542033 RNFT1Q5M7Z0 435 aa6.04□□□□□ -1.44
USP28-210ENST00000542033 SAMD5Q5TGI4 173 aa6.04□□□□□ -1.44
USP28-210ENST00000542033 RETREG2Q8NC44 543 aa6.04□□□□□ -1.44
USP28-210ENST00000542033 ZCCHC2Q9C0B9 1178 aaKnown RBP6.04□□□□□ -1.44
USP28-210ENST00000542033 HCN4Q9Y3Q4 1203 aa6.04□□□□□ -1.44
USP28-210ENST00000542033 PRMT3O60678 531 aa6.03□□□□□ -1.44
USP28-210ENST00000542033 THBS1P07996 1170 aa6.03□□□□□ -1.44
USP28-210ENST00000542033 MAP2K3P46734 347 aa6.03□□□□□ -1.44
USP28-210ENST00000542033 FAM69CQ0P6D2 419 aa6.03□□□□□ -1.44
USP28-210ENST00000542033 SH3PXD2AQ5TCZ1 1133 aa6.03□□□□□ -1.44
USP28-210ENST00000542033 ALDH16A1Q8IZ83 802 aa6.03□□□□□ -1.44
USP28-210ENST00000542033 CLP1Q92989 425 aaKnown RBP6.03□□□□□ -1.44
USP28-210ENST00000542033 TMEM88BA6NKF7 163 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 BNIP3LO60238 219 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 ADAMTS2O95450 1211 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 FAM157BP0CG42 384 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 SLURP2P0DP57 97 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 FGFR3P22607 806 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 UBAP2LQ14157 1087 aaKnown RBP6.02□□□□□ -1.45
USP28-210ENST00000542033 RTN1Q16799 776 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 ABHD17AQ96GS6 310 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 NGLY1Q96IV0 654 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 PRIMPOLQ96LW4 560 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 NDFIP2Q9NV92 336 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 IGF1RP08069 1367 aa6.02□□□□□ -1.45
USP28-210ENST00000542033 KHNYNO15037 678 aaKnown RBP6.01□□□□□ -1.45
USP28-210ENST00000542033 BMP4P12644 408 aa6.01□□□□□ -1.45
USP28-210ENST00000542033 ATP2B4P23634 1241 aa6.01□□□□□ -1.45
USP28-210ENST00000542033 LAMC2Q13753 1193 aa6.01□□□□□ -1.45
USP28-210ENST00000542033 LRRC69Q6ZNQ3 347 aa6.01□□□□□ -1.45
USP28-210ENST00000542033 DCDC2BA2VCK2 349 aa6□□□□□ -1.45
USP28-210ENST00000542033 CARNS1A5YM72 827 aa6□□□□□ -1.45
USP28-210ENST00000542033 MAPTP10636 758 aaKnown RBP6□□□□□ -1.45
USP28-210ENST00000542033 MAP3K10Q02779 954 aa6□□□□□ -1.45
USP28-210ENST00000542033 TNP2Q05952 138 aa6□□□□□ -1.45
USP28-210ENST00000542033 B4GALNT3Q6L9W6 998 aa6□□□□□ -1.45
USP28-210ENST00000542033 SVOPQ8N4V2 548 aa6□□□□□ -1.45
USP28-210ENST00000542033 OCLNQ16625 522 aa5.99□□□□□ -1.45
USP28-210ENST00000542033 FAM182BQ5T319 152 aa5.99□□□□□ -1.45
USP28-210ENST00000542033 C7orf43Q8WVR3 580 aa5.99□□□□□ -1.45
USP28-210ENST00000542033 SUSD3Q96L08 255 aa5.99□□□□□ -1.45
USP28-210ENST00000542033 ENAMQ9NRM1 1142 aa5.99□□□□□ -1.45
USP28-210ENST00000542033 MARK1Q9P0L2 795 aa5.99□□□□□ -1.45
USP28-210ENST00000542033 CXXC1Q9P0U4 656 aaPredicted RBP5.99□□□□□ -1.45
USP28-210ENST00000542033 GDF2Q9UK05 429 aaPredicted RBP5.99□□□□□ -1.45
USP28-210ENST00000542033 PTCD1O75127 700 aaKnown RBP5.98□□□□□ -1.45
USP28-210ENST00000542033 FKBP5Q13451 457 aaPredicted RBP5.98□□□□□ -1.45
USP28-210ENST00000542033 IER5Q5VY09 327 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 GOLGA6L1Q8N7Z2 621 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 COL26A1Q96A83 441 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 MYO19Q96H55 970 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 HSH2DQ96JZ2 352 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 CEP63Q96MT8 703 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 LRRC4BQ9NT99 713 aa5.98□□□□□ -1.45
USP28-210ENST00000542033 TGFBR3LH3BV60 316 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 EFSO43281 561 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 PDIA4P13667 645 aaKnown RBP5.97□□□□□ -1.45
USP28-210ENST00000542033 EPB42P16452 691 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 NEUROD1Q13562 356 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 SUZ12Q15022 739 aaKnown RBP5.97□□□□□ -1.45
USP28-210ENST00000542033 KLRG1Q96E93 195 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 MKNK1Q9BUB5 465 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 OXCT2Q9BYC2 517 aaPredicted RBP5.97□□□□□ -1.45
USP28-210ENST00000542033 QTRT2Q9H974 415 aaKnown RBP5.97□□□□□ -1.45
USP28-210ENST00000542033 BRD7Q9NPI1 651 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 AVENQ9NQS1 362 aaPredicted RBP5.97□□□□□ -1.45
USP28-210ENST00000542033 SLAIN2Q9P270 581 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 PRR12Q9ULL5 1215 aa5.97□□□□□ -1.45
USP28-210ENST00000542033 CELA2BP08218 269 aaPredicted RBP5.96□□□□□ -1.46
USP28-210ENST00000542033 ARAFP10398 606 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 BCRP11274 1271 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 CD33P20138 364 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 LORP23490 312 aaPredicted RBP5.96□□□□□ -1.46
USP28-210ENST00000542033 SSFA2P28290 1259 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 CTBSQ01459 385 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 TYRO3Q06418 890 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 DGKZQ13574 1117 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 C11orf91Q3C1V1 193 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 ZNF385CQ66K41 422 aaPredicted RBP5.96□□□□□ -1.46
USP28-210ENST00000542033 BTLAQ7Z6A9 289 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 HOMEZQ8IX15 550 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 MTMR7Q9Y216 660 aa5.96□□□□□ -1.46
USP28-210ENST00000542033 ADH6P28332 368 aa5.95□□□□□ -1.46
USP28-210ENST00000542033 C16orf46Q6P387 395 aa5.95□□□□□ -1.46
USP28-210ENST00000542033 ZNF280CQ8ND82 737 aa5.95□□□□□ -1.46
USP28-210ENST00000542033 ACDQ96AP0 544 aa5.95□□□□□ -1.46
USP28-210ENST00000542033 KCNH4Q9UQ05 1017 aa5.95□□□□□ -1.46
USP28-210ENST00000542033 KCNQ4P56696 695 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 ZNF468Q5VIY5 522 aaPredicted RBP5.94□□□□□ -1.46
USP28-210ENST00000542033 LYPD4Q6UWN0 246 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 SLCO4C1Q6ZQN7 724 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 WHAMMQ8TF30 809 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 TRAIPQ9BWF2 469 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 EFCC1Q9HA90 598 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 KLK14Q9P0G3 267 aa5.94□□□□□ -1.46
USP28-210ENST00000542033 C2CD2LO14523 706 aa5.93□□□□□ -1.46
USP28-210ENST00000542033 OIP5O43482 229 aa5.93□□□□□ -1.46
USP28-210ENST00000542033 BRD1O95696 1058 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms