RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 NECTIN2Q92692 538 aa24.12■■□□□ 1.45
VPS33A-205ENST00000541169 SRP68Q9UHB9 627 aaKnown RBP24.12■■□□□ 1.45
VPS33A-205ENST00000541169 MMP10P09238 476 aa24.1■■□□□ 1.45
VPS33A-205ENST00000541169 FKBP8Q14318 412 aa24.1■■□□□ 1.45
VPS33A-205ENST00000541169 MSL1Q68DK7 614 aa24.1■■□□□ 1.45
VPS33A-205ENST00000541169 PARP3Q9Y6F1 533 aa24.1■■□□□ 1.45
VPS33A-205ENST00000541169 DDX58O95786 925 aaKnown RBP24.09■■□□□ 1.45
VPS33A-205ENST00000541169 TM4SF1P30408 202 aa24.09■■□□□ 1.45
VPS33A-205ENST00000541169 COPS6Q7L5N1 327 aa24.09■■□□□ 1.45
VPS33A-205ENST00000541169 CDCA7LQ96GN5 454 aa24.09■■□□□ 1.45
VPS33A-205ENST00000541169 PROSER3Q2NL68 480 aa24.08■■□□□ 1.45
VPS33A-205ENST00000541169 HSP90AB3PQ58FF7 597 aa24.08■■□□□ 1.45
VPS33A-205ENST00000541169 SETDB2Q96T68 719 aa24.08■■□□□ 1.45
VPS33A-205ENST00000541169 BCL2L12Q9HB09 334 aa24.08■■□□□ 1.45
VPS33A-205ENST00000541169 GIGYF2Q6Y7W6 1299 aaKnown RBP24.07■■□□□ 1.44
VPS33A-205ENST00000541169 PLBD2Q8NHP8 589 aa24.07■■□□□ 1.44
VPS33A-205ENST00000541169 XAGE3Q8WTP9 111 aa24.07■■□□□ 1.44
VPS33A-205ENST00000541169 CARMIL3Q8ND23 1372 aa24.06■■□□□ 1.44
VPS33A-205ENST00000541169 SLC4A2P04920 1241 aa24.06■■□□□ 1.44
VPS33A-205ENST00000541169 ANKRD13DQ6ZTN6 518 aa24.06■■□□□ 1.44
VPS33A-205ENST00000541169 ATP10DQ9P241 1426 aa24.05■■□□□ 1.44
VPS33A-205ENST00000541169 NFIXQ14938 502 aa24.05■■□□□ 1.44
VPS33A-205ENST00000541169 TTLL7Q6ZT98 887 aa24.05■■□□□ 1.44
VPS33A-205ENST00000541169 ANXA1P04083 346 aa24.04■■□□□ 1.44
VPS33A-205ENST00000541169 AIMP1Q12904 312 aaKnown RBP24.04■■□□□ 1.44
VPS33A-205ENST00000541169 CD2APQ9Y5K6 639 aa24.04■■□□□ 1.44
VPS33A-205ENST00000541169 NUP98P52948 1817 aa24.03■■□□□ 1.44
VPS33A-205ENST00000541169 ALDH1L2Q3SY69 923 aa24.03■■□□□ 1.44
VPS33A-205ENST00000541169 ZBTB3Q9H5J0 574 aa24.03■■□□□ 1.44
VPS33A-205ENST00000541169 POLRMTO00411 1230 aaKnown RBP24.02■■□□□ 1.44
VPS33A-205ENST00000541169 TBC1D9BQ66K14 1250 aa24.02■■□□□ 1.44
VPS33A-205ENST00000541169 PARP10Q53GL7 1025 aa24.01■■□□□ 1.43
VPS33A-205ENST00000541169 NYXQ9GZU5 481 aa24.01■■□□□ 1.43
VPS33A-205ENST00000541169 NIP7Q9Y221 180 aaKnown RBP eCLIP24.01■■□□□ 1.43
VPS33A-205ENST00000541169 HLFQ16534 295 aa24■■□□□ 1.43
VPS33A-205ENST00000541169 TPTE2Q6XPS3 522 aa24■■□□□ 1.43
VPS33A-205ENST00000541169 RIC3Q7Z5B4 369 aa24■■□□□ 1.43
VPS33A-205ENST00000541169 IBTKQ9P2D0 1353 aaPredicted RBP24■■□□□ 1.43
VPS33A-205ENST00000541169 NRXN2Q9P2S2 1712 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 SERPINB2P05120 415 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 DDR1Q08345 913 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 TCIRG1Q13488 830 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 KSR2Q6VAB6 950 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 ZNF34Q8IZ26 560 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 PHAXQ9H814 394 aaKnown RBP23.99■■□□□ 1.43
VPS33A-205ENST00000541169 PDZRN3Q9UPQ7 1066 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 RNF123Q5XPI4 1314 aa23.99■■□□□ 1.43
VPS33A-205ENST00000541169 FLIIQ13045 1269 aa23.98■■□□□ 1.43
VPS33A-205ENST00000541169 BICDL1Q6ZP65 573 aa23.98■■□□□ 1.43
VPS33A-205ENST00000541169 PPP1R42Q7Z4L9 355 aa23.98■■□□□ 1.43
VPS33A-205ENST00000541169 NPHP1O15259 732 aa23.97■■□□□ 1.43
VPS33A-205ENST00000541169 ANKRD36CQ5JPF3 1778 aa23.97■■□□□ 1.43
VPS33A-205ENST00000541169 NBPF5PQ86XG9 351 aaPredicted RBP23.97■■□□□ 1.43
VPS33A-205ENST00000541169 FHDC1Q9C0D6 1143 aaPredicted RBP23.97■■□□□ 1.43
VPS33A-205ENST00000541169 KIF13BQ9NQT8 1826 aa23.96■■□□□ 1.43
VPS33A-205ENST00000541169 BRPF1P55201 1214 aaPredicted RBP23.96■■□□□ 1.43
VPS33A-205ENST00000541169 TGFB2P61812 414 aa23.96■■□□□ 1.43
VPS33A-205ENST00000541169 NEXNQ0ZGT2 675 aa23.96■■□□□ 1.43
VPS33A-205ENST00000541169 TRIM28Q13263 835 aaKnown RBP23.96■■□□□ 1.43
VPS33A-205ENST00000541169 CNBD1Q8NA66 436 aa23.96■■□□□ 1.43
VPS33A-205ENST00000541169 C10orf71Q711Q0 1435 aa23.95■■□□□ 1.42
VPS33A-205ENST00000541169 PTPRCP08575 1304 aa23.95■■□□□ 1.42
VPS33A-205ENST00000541169 ST5P78524 1137 aa23.95■■□□□ 1.42
VPS33A-205ENST00000541169 FKBP5Q13451 457 aaPredicted RBP23.95■■□□□ 1.42
VPS33A-205ENST00000541169 ARFGEF2Q9Y6D5 1785 aa23.95■■□□□ 1.42
VPS33A-205ENST00000541169 AFDNP55196 1824 aaKnown RBP23.94■■□□□ 1.42
VPS33A-205ENST00000541169 TCERG1O14776 1098 aaKnown RBP23.94■■□□□ 1.42
VPS33A-205ENST00000541169 SYT17Q9BSW7 474 aa23.94■■□□□ 1.42
VPS33A-205ENST00000541169 METTL22Q9BUU2 404 aaPredicted RBP23.94■■□□□ 1.42
VPS33A-205ENST00000541169 PI4KAP2A4QPH2 592 aa23.93■■□□□ 1.42
VPS33A-205ENST00000541169 PI4KAP1Q8N8J0 262 aa23.93■■□□□ 1.42
VPS33A-205ENST00000541169 BRIP1Q9BX63 1249 aa23.93■■□□□ 1.42
VPS33A-205ENST00000541169 HSP90B1P14625 803 aaKnown RBP23.92■■□□□ 1.42
VPS33A-205ENST00000541169 GTF2E1P29083 439 aaPredicted RBP23.92■■□□□ 1.42
VPS33A-205ENST00000541169 SSH1Q8WYL5 1049 aa23.92■■□□□ 1.42
VPS33A-205ENST00000541169 SMC4Q9NTJ3 1288 aa23.92■■□□□ 1.42
VPS33A-205ENST00000541169 MAP3K2Q9Y2U5 619 aa23.92■■□□□ 1.42
VPS33A-205ENST00000541169 PDE6BP35913 854 aa23.91■■□□□ 1.42
VPS33A-205ENST00000541169 PRR5LQ6MZQ0 368 aa23.91■■□□□ 1.42
VPS33A-205ENST00000541169 G2E3Q7L622 706 aa23.91■■□□□ 1.42
VPS33A-205ENST00000541169 MRPL50Q8N5N7 158 aaKnown RBP23.91■■□□□ 1.42
VPS33A-205ENST00000541169 CCDC191Q8NCU4 936 aa23.91■■□□□ 1.42
VPS33A-205ENST00000541169 ISCA1Q9BUE6 129 aa23.91■■□□□ 1.42
VPS33A-205ENST00000541169 UTP14AQ9BVJ6 771 aaKnown RBP23.91■■□□□ 1.42
VPS33A-205ENST00000541169 GPTP24298 496 aa23.9■■□□□ 1.42
VPS33A-205ENST00000541169 RARSP54136 660 aaKnown RBP23.9■■□□□ 1.42
VPS33A-205ENST00000541169 NLRP10Q86W26 655 aa23.9■■□□□ 1.42
VPS33A-205ENST00000541169 KLHL34Q8N239 644 aa23.9■■□□□ 1.42
VPS33A-205ENST00000541169 ADCY9O60503 1353 aa23.9■■□□□ 1.42
VPS33A-205ENST00000541169 UBN2Q6ZU65 1347 aa23.89■■□□□ 1.42
VPS33A-205ENST00000541169 KIF16BQ96L93 1317 aa23.89■■□□□ 1.42
VPS33A-205ENST00000541169 DNAAF4Q8WXU2 420 aa23.89■■□□□ 1.41
VPS33A-205ENST00000541169 RIC1Q4ADV7 1423 aa23.89■■□□□ 1.41
VPS33A-205ENST00000541169 DCAF8L1A6NGE4 600 aa23.88■■□□□ 1.41
VPS33A-205ENST00000541169 IPO8O15397 1037 aaKnown RBP23.87■■□□□ 1.41
VPS33A-205ENST00000541169 SUSD4Q5VX71 490 aa23.87■■□□□ 1.41
VPS33A-205ENST00000541169 ARHGAP45Q92619 1136 aa23.87■■□□□ 1.41
VPS33A-205ENST00000541169 MYD88Q99836 296 aa23.87■■□□□ 1.41
VPS33A-205ENST00000541169 NTSR2O95665 410 aa23.86■■□□□ 1.41
VPS33A-205ENST00000541169 LINS1Q8NG48 757 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms