RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 YTHDC1Q96MU7 727 aaKnown RBP22.39■■□□□ 1.17
CLSTN3-210ENST00000540931 MAP3K15Q6ZN16 1313 aa22.38■■□□□ 1.17
CLSTN3-210ENST00000540931 POLD1P28340 1107 aa22.38■■□□□ 1.17
CLSTN3-210ENST00000540931 BRPF1P55201 1214 aaPredicted RBP22.38■■□□□ 1.17
CLSTN3-210ENST00000540931 GPR162Q16538 588 aa22.38■■□□□ 1.17
CLSTN3-210ENST00000540931 COPS6Q7L5N1 327 aa22.38■■□□□ 1.17
CLSTN3-210ENST00000540931 TUBGCP6Q96RT7 1819 aa22.37■■□□□ 1.17
CLSTN3-210ENST00000540931 ANKRD13DQ6ZTN6 518 aa22.37■■□□□ 1.17
CLSTN3-210ENST00000540931 LRP10Q7Z4F1 713 aa22.37■■□□□ 1.17
CLSTN3-210ENST00000540931 PLBD2Q8NHP8 589 aa22.37■■□□□ 1.17
CLSTN3-210ENST00000540931 XAGE3Q8WTP9 111 aa22.36■■□□□ 1.17
CLSTN3-210ENST00000540931 TBC1D2BQ9UPU7 963 aa22.36■■□□□ 1.17
CLSTN3-210ENST00000540931 COL24A1Q17RW2 1714 aa22.36■■□□□ 1.17
CLSTN3-210ENST00000540931 PTPRCP08575 1304 aa22.35■■□□□ 1.17
CLSTN3-210ENST00000540931 CAMTA2O94983 1202 aa22.35■■□□□ 1.17
CLSTN3-210ENST00000540931 GYS1P13807 737 aa22.35■■□□□ 1.17
CLSTN3-210ENST00000540931 USPL1Q5W0Q7 1092 aa22.35■■□□□ 1.17
CLSTN3-210ENST00000540931 KIF16BQ96L93 1317 aa22.34■■□□□ 1.17
CLSTN3-210ENST00000540931 GIGYF2Q6Y7W6 1299 aaKnown RBP22.34■■□□□ 1.17
CLSTN3-210ENST00000540931 SMC4Q9NTJ3 1288 aa22.34■■□□□ 1.17
CLSTN3-210ENST00000540931 IPO8O15397 1037 aaKnown RBP22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 PIP4K2AP48426 406 aaPredicted RBP22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 AIMP1Q12904 312 aaKnown RBP22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 FLIIQ13045 1269 aa22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 PROSER3Q2NL68 480 aa22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 RIC3Q7Z5B4 369 aa22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 AMIGO3Q86WK7 504 aa22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 C4AP0C0L4 1744 aa22.33■■□□□ 1.17
CLSTN3-210ENST00000540931 RARSP54136 660 aaKnown RBP22.32■■□□□ 1.16
CLSTN3-210ENST00000540931 NEXNQ0ZGT2 675 aa22.32■■□□□ 1.16
CLSTN3-210ENST00000540931 KSR2Q6VAB6 950 aa22.32■■□□□ 1.16
CLSTN3-210ENST00000540931 SETDB2Q96T68 719 aa22.32■■□□□ 1.16
CLSTN3-210ENST00000540931 FKBP5Q13451 457 aaPredicted RBP22.31■■□□□ 1.16
CLSTN3-210ENST00000540931 PARP10Q53GL7 1025 aa22.31■■□□□ 1.16
CLSTN3-210ENST00000540931 KLHL34Q8N239 644 aa22.31■■□□□ 1.16
CLSTN3-210ENST00000540931 SSH1Q8WYL5 1049 aa22.31■■□□□ 1.16
CLSTN3-210ENST00000540931 SCN7AQ01118 1682 aa22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 ANXA1P04083 346 aa22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 TTLL7Q6ZT98 887 aa22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 MRPL50Q8N5N7 158 aaKnown RBP22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 ARHGAP45Q92619 1136 aa22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 PARP3Q9Y6F1 533 aa22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 ATP10DQ9P241 1426 aa22.3■■□□□ 1.16
CLSTN3-210ENST00000540931 NLGN2Q8NFZ4 835 aa22.29■■□□□ 1.16
CLSTN3-210ENST00000540931 NYXQ9GZU5 481 aa22.29■■□□□ 1.16
CLSTN3-210ENST00000540931 PHAXQ9H814 394 aaKnown RBP22.29■■□□□ 1.16
CLSTN3-210ENST00000540931 SRP68Q9UHB9 627 aaKnown RBP22.29■■□□□ 1.16
CLSTN3-210ENST00000540931 RNF123Q5XPI4 1314 aa22.29■■□□□ 1.16
CLSTN3-210ENST00000540931 CARMIL3Q8ND23 1372 aa22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 BCORQ6W2J9 1755 aa22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 GOLGB1Q14789 3259 aaKnown RBP22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 HSP90B1P14625 803 aaKnown RBP22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 TM4SF1P30408 202 aa22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 TCIRG1Q13488 830 aa22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 API5Q9BZZ5 524 aaKnown RBP22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 ZBTB3Q9H5J0 574 aa22.28■■□□□ 1.16
CLSTN3-210ENST00000540931 MS4A1P11836 297 aa22.27■■□□□ 1.16
CLSTN3-210ENST00000540931 TRIM28Q13263 835 aaKnown RBP22.27■■□□□ 1.16
CLSTN3-210ENST00000540931 FKBP8Q14318 412 aa22.27■■□□□ 1.16
CLSTN3-210ENST00000540931 PPP1R42Q7Z4L9 355 aa22.27■■□□□ 1.16
CLSTN3-210ENST00000540931 TPTE2Q6XPS3 522 aa22.26■■□□□ 1.15
CLSTN3-210ENST00000540931 PELP1Q8IZL8 1130 aaKnown RBP22.26■■□□□ 1.15
CLSTN3-210ENST00000540931 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.26■■□□□ 1.15
CLSTN3-210ENST00000540931 METTL22Q9BUU2 404 aaPredicted RBP22.26■■□□□ 1.15
CLSTN3-210ENST00000540931 BCL2L12Q9HB09 334 aa22.26■■□□□ 1.15
CLSTN3-210ENST00000540931 NIP7Q9Y221 180 aaKnown RBP eCLIP22.26■■□□□ 1.15
CLSTN3-210ENST00000540931 IBTKQ9P2D0 1353 aaPredicted RBP22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 PI4KAP2A4QPH2 592 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 TCERG1O14776 1098 aaKnown RBP22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 MMP10P09238 476 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 SMIM5Q71RC9 77 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 ZNF34Q8IZ26 560 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 PI4KAP1Q8N8J0 262 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 DNAAF4Q8WXU2 420 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 RCAN3Q9UKA8 241 aa22.25■■□□□ 1.15
CLSTN3-210ENST00000540931 NPHP1O15259 732 aa22.24■■□□□ 1.15
CLSTN3-210ENST00000540931 NFIXQ14938 502 aa22.24■■□□□ 1.15
CLSTN3-210ENST00000540931 PDZRN3Q9UPQ7 1066 aa22.24■■□□□ 1.15
CLSTN3-210ENST00000540931 MAP3K2Q9Y2U5 619 aa22.24■■□□□ 1.15
CLSTN3-210ENST00000540931 NUP98P52948 1817 aa22.23■■□□□ 1.15
CLSTN3-210ENST00000540931 YBX3P16989 372 aaKnown RBP eCLIP22.23■■□□□ 1.15
CLSTN3-210ENST00000540931 HLFQ16534 295 aa22.23■■□□□ 1.15
CLSTN3-210ENST00000540931 TBC1D9BQ66K14 1250 aa22.23■■□□□ 1.15
CLSTN3-210ENST00000540931 CCDC191Q8NCU4 936 aa22.23■■□□□ 1.15
CLSTN3-210ENST00000540931 MSL1Q68DK7 614 aa22.22■■□□□ 1.15
CLSTN3-210ENST00000540931 G2E3Q7L622 706 aa22.22■■□□□ 1.15
CLSTN3-210ENST00000540931 POLRMTO00411 1230 aaKnown RBP22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 GRIN3BO60391 1043 aa22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 SERPINB2P05120 415 aa22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 GTF2E1P29083 439 aaPredicted RBP22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 ST5P78524 1137 aa22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 NBPF5PQ86XG9 351 aaPredicted RBP22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 LINS1Q8NG48 757 aa22.21■■□□□ 1.15
CLSTN3-210ENST00000540931 ZKSCAN2Q63HK3 967 aa22.2■■□□□ 1.14
CLSTN3-210ENST00000540931 BICDL1Q6ZP65 573 aa22.2■■□□□ 1.14
CLSTN3-210ENST00000540931 ISCA1Q9BUE6 129 aa22.2■■□□□ 1.14
CLSTN3-210ENST00000540931 BCL2L13Q9BXK5 485 aa22.2■■□□□ 1.14
CLSTN3-210ENST00000540931 HDAC5Q9UQL6 1122 aa22.2■■□□□ 1.14
CLSTN3-210ENST00000540931 ALDH1L1O75891 902 aa22.19■■□□□ 1.14
CLSTN3-210ENST00000540931 CNBD1Q8NA66 436 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms