RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 A0A0U1RQG5 324 aaPredicted RBP16.78■□□□□ 0.28
COLCA1-204ENST00000540738 JAKMIP1Q96N16 626 aaKnown RBP16.78■□□□□ 0.28
COLCA1-204ENST00000540738 APBA3O96018 575 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 ARHGAP45Q92619 1136 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 CUL5Q93034 780 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 PARP10Q53GL7 1025 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 ANKRD2Q9GZV1 360 aa16.78■□□□□ 0.28
COLCA1-204ENST00000540738 RBM17Q96I25 401 aaKnown RBP16.77■□□□□ 0.28
COLCA1-204ENST00000540738 ECHDC1Q9NTX5 307 aa16.77■□□□□ 0.28
COLCA1-204ENST00000540738 PDE4BQ07343 736 aa16.77■□□□□ 0.28
COLCA1-204ENST00000540738 FLAD1Q8NFF5 587 aa16.77■□□□□ 0.28
COLCA1-204ENST00000540738 ODF2Q5BJF6 829 aa16.77■□□□□ 0.28
COLCA1-204ENST00000540738 CNBD1Q8NA66 436 aa16.77■□□□□ 0.28
COLCA1-204ENST00000540738 CRNKL1Q9BZJ0 848 aaKnown RBP16.77■□□□□ 0.28
COLCA1-204ENST00000540738 ANXA1P04083 346 aa16.77■□□□□ 0.27
COLCA1-204ENST00000540738 HMGB1P09429 215 aaKnown RBP16.77■□□□□ 0.27
COLCA1-204ENST00000540738 CCDC70Q6NSX1 233 aa16.77■□□□□ 0.27
COLCA1-204ENST00000540738 RANBP6O60518 1105 aaKnown RBP16.77■□□□□ 0.27
COLCA1-204ENST00000540738 UGGT1Q9NYU2 1555 aa16.76■□□□□ 0.27
COLCA1-204ENST00000540738 PLEKHH1Q9ULM0 1364 aa16.76■□□□□ 0.27
COLCA1-204ENST00000540738 STK3Q13188 491 aa16.76■□□□□ 0.27
COLCA1-204ENST00000540738 MPHOSPH6Q99547 160 aaKnown RBP16.76■□□□□ 0.27
COLCA1-204ENST00000540738 ZNF213O14771 459 aa16.76■□□□□ 0.27
COLCA1-204ENST00000540738 BABAM1Q9NWV8 329 aa16.76■□□□□ 0.27
COLCA1-204ENST00000540738 LINS1Q8NG48 757 aa16.76■□□□□ 0.27
COLCA1-204ENST00000540738 GRM8O00222 908 aa16.75■□□□□ 0.27
COLCA1-204ENST00000540738 PZPP20742 1482 aa16.75■□□□□ 0.27
COLCA1-204ENST00000540738 ATP2B3Q16720 1220 aa16.75■□□□□ 0.27
COLCA1-204ENST00000540738 IL15P40933 162 aaPredicted RBP16.75■□□□□ 0.27
COLCA1-204ENST00000540738 EVI5LQ96CN4 794 aa16.75■□□□□ 0.27
COLCA1-204ENST00000540738 TSPOAP1O95153 1857 aa16.75■□□□□ 0.27
COLCA1-204ENST00000540738 TESK2Q96S53 571 aa16.74■□□□□ 0.27
COLCA1-204ENST00000540738 FAM13BQ9NYF5 915 aa16.74■□□□□ 0.27
COLCA1-204ENST00000540738 TRAF1Q13077 416 aa16.74■□□□□ 0.27
COLCA1-204ENST00000540738 STIM1Q13586 685 aa16.74■□□□□ 0.27
COLCA1-204ENST00000540738 MAGEC2Q9UBF1 373 aaPredicted RBP16.74■□□□□ 0.27
COLCA1-204ENST00000540738 KDM6BO15054 1643 aa16.73■□□□□ 0.27
COLCA1-204ENST00000540738 IRS4O14654 1257 aaPredicted RBP16.73■□□□□ 0.27
COLCA1-204ENST00000540738 TRIM27P14373 513 aa16.73■□□□□ 0.27
COLCA1-204ENST00000540738 CCDC87Q9NVE4 849 aa16.73■□□□□ 0.27
COLCA1-204ENST00000540738 NSFL1CQ9UNZ2 370 aaKnown RBP16.73■□□□□ 0.27
COLCA1-204ENST00000540738 ZFYP08048 801 aaPredicted RBP16.72■□□□□ 0.27
COLCA1-204ENST00000540738 CCDC178Q5BJE1 867 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 RXRBP28702 533 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 LMBR1LQ6UX01 489 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 QTRT2Q9H974 415 aaKnown RBP16.72■□□□□ 0.27
COLCA1-204ENST00000540738 ZHX3Q9H4I2 956 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 ZCCHC11Q5TAX3 1644 aaKnown RBP16.72■□□□□ 0.27
COLCA1-204ENST00000540738 GOLIM4O00461 696 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 PLCG2P16885 1265 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 PRIM1P49642 420 aaKnown RBP16.72■□□□□ 0.27
COLCA1-204ENST00000540738 CEP131Q9UPN4 1083 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 KAT6BQ8WYB5 2073 aa16.72■□□□□ 0.27
COLCA1-204ENST00000540738 LARP1BQ659C4 914 aaKnown RBP16.71■□□□□ 0.27
COLCA1-204ENST00000540738 PPP4R3AQ6IN85 833 aa16.71■□□□□ 0.27
COLCA1-204ENST00000540738 HECW2Q9P2P5 1572 aa16.71■□□□□ 0.27
COLCA1-204ENST00000540738 MAGI3Q5TCQ9 1506 aa16.71■□□□□ 0.27
COLCA1-204ENST00000540738 CATIPQ7Z7H3 387 aa16.71■□□□□ 0.27
COLCA1-204ENST00000540738 WDR33Q9C0J8 1336 aaKnown RBP16.71■□□□□ 0.27
COLCA1-204ENST00000540738 LETM1O95202 739 aaPredicted RBP16.71■□□□□ 0.27
COLCA1-204ENST00000540738 MBD3O95983 291 aa16.71■□□□□ 0.27
COLCA1-204ENST00000540738 KIF5BP33176 963 aa16.71■□□□□ 0.26
COLCA1-204ENST00000540738 TSHZ2Q9NRE2 1034 aa16.71■□□□□ 0.26
COLCA1-204ENST00000540738 FILIP1LQ4L180 1135 aa16.7■□□□□ 0.26
COLCA1-204ENST00000540738 CCDC12Q8WUD4 166 aaPredicted RBP16.7■□□□□ 0.26
COLCA1-204ENST00000540738 DDX17Q92841 729 aaKnown RBP16.7■□□□□ 0.26
COLCA1-204ENST00000540738 DDX21Q9NR30 783 aaKnown RBP eCLIP16.7■□□□□ 0.26
COLCA1-204ENST00000540738 SYCP1Q15431 976 aa16.7■□□□□ 0.26
COLCA1-204ENST00000540738 SMARCA5O60264 1052 aaPredicted RBP16.7■□□□□ 0.26
COLCA1-204ENST00000540738 ZNF790Q6PG37 636 aa16.7■□□□□ 0.26
COLCA1-204ENST00000540738 SLC12A7Q9Y666 1083 aa16.7■□□□□ 0.26
COLCA1-204ENST00000540738 H0YIN7 160 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 TNNI2P48788 182 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 DACH1Q9UI36 760 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 TSPY2A6NKD2 308 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 HOXB7P09629 217 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 SUPT20HQ8NEM7 779 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 SNRKQ9NRH2 765 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 TRIM21P19474 475 aaKnown RBP16.69■□□□□ 0.26
COLCA1-204ENST00000540738 PIBF1Q8WXW3 757 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 SAMD9LQ8IVG5 1584 aa16.69■□□□□ 0.26
COLCA1-204ENST00000540738 SSBP05455 408 aaKnown RBP eCLIP16.68■□□□□ 0.26
COLCA1-204ENST00000540738 GOLGA6L1Q8N7Z2 621 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 IFIT3O14879 490 aaKnown RBP16.68■□□□□ 0.26
COLCA1-204ENST00000540738 KRT85P78386 507 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 RAB34Q9BZG1 259 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 ERVV-2B6SEH9 535 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 CASTP20810 708 aaKnown RBP16.68■□□□□ 0.26
COLCA1-204ENST00000540738 JARID2Q92833 1246 aaPredicted RBP16.68■□□□□ 0.26
COLCA1-204ENST00000540738 DNAI2Q9GZS0 605 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 SH3TC1Q8TE82 1336 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 NAA16Q6N069 864 aaPredicted RBP16.68■□□□□ 0.26
COLCA1-204ENST00000540738 PRPF40BQ6NWY9 871 aaKnown RBP16.68■□□□□ 0.26
COLCA1-204ENST00000540738 SCLT1Q96NL6 688 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 CFAP45Q9UL16 551 aa16.68■□□□□ 0.26
COLCA1-204ENST00000540738 ME1P48163 572 aa16.67■□□□□ 0.26
COLCA1-204ENST00000540738 SLC52A2Q9HAB3 445 aa16.67■□□□□ 0.26
COLCA1-204ENST00000540738 MBD5Q9P267 1494 aa16.67■□□□□ 0.26
COLCA1-204ENST00000540738 CYP7A1P22680 504 aa16.67■□□□□ 0.26
COLCA1-204ENST00000540738 KAT14Q9H8E8 782 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms