RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 KCPQ6ZWJ8 1503 aa11.89□□□□□ -0.51
CLIP1-212ENST00000540304 SRGAP3O43295 1099 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 RIC3Q7Z5B4 369 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 XAGE3Q8WTP9 111 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 TUBGCP6Q96RT7 1819 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 RAB11FIP3O75154 756 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 CWF19L2Q2TBE0 894 aaKnown RBP11.88□□□□□ -0.51
CLIP1-212ENST00000540304 LRP10Q7Z4F1 713 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 USP35Q9P2H5 1018 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 ARFGEF2Q9Y6D5 1785 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 WNK3Q9BYP7 1800 aa11.88□□□□□ -0.51
CLIP1-212ENST00000540304 RBM25P49756 843 aaKnown RBP11.87□□□□□ -0.51
CLIP1-212ENST00000540304 PDE1AP54750 535 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 MTX1Q13505 466 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 COPS6Q7L5N1 327 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 FAM43AQ8N2R8 423 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 UTYO14607 1347 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 ERBB4Q15303 1308 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 SALL3Q9BXA9 1300 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 TNS2Q63HR2 1409 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 DISP2A7MBM2 1401 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 GRM8O00222 908 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 NEXNQ0ZGT2 675 aa11.87□□□□□ -0.51
CLIP1-212ENST00000540304 SURF6O75683 361 aaKnown RBP11.86□□□□□ -0.51
CLIP1-212ENST00000540304 SDSP20132 328 aa11.86□□□□□ -0.51
CLIP1-212ENST00000540304 AFDNP55196 1824 aaKnown RBP11.86□□□□□ -0.51
CLIP1-212ENST00000540304 MX1P20591 662 aa11.86□□□□□ -0.51
CLIP1-212ENST00000540304 HSP90AB4PQ58FF6 505 aa11.86□□□□□ -0.51
CLIP1-212ENST00000540304 ANKRD13DQ6ZTN6 518 aa11.86□□□□□ -0.51
CLIP1-212ENST00000540304 METTL22Q9BUU2 404 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-212ENST00000540304 IGKV5-2P06315 115 aa11.85□□□□□ -0.51
CLIP1-212ENST00000540304 CASC1Q6TDU7 716 aa11.85□□□□□ -0.51
CLIP1-212ENST00000540304 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLIP1-212ENST00000540304 NEURL1BA8MQ27 555 aa11.85□□□□□ -0.51
CLIP1-212ENST00000540304 AOX1Q06278 1338 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 ITGB4P16144 1822 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 PIP4K2AP48426 406 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-212ENST00000540304 SECISBP2LQ93073 1101 aaKnown RBP11.84□□□□□ -0.51
CLIP1-212ENST00000540304 KIF1BPQ96EK5 621 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 MYD88Q99836 296 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 TMOD3Q9NYL9 352 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 STAP2Q9UGK3 403 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 LRP6O75581 1613 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 NRAPQ86VF7 1730 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 TSHZ3Q63HK5 1081 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 RHPN1Q8TCX5 695 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 NUP188Q5SRE5 1749 aa11.84□□□□□ -0.51
CLIP1-212ENST00000540304 GCKRQ14397 625 aa11.83□□□□□ -0.52
CLIP1-212ENST00000540304 SUCLG2Q96I99 432 aa11.83□□□□□ -0.52
CLIP1-212ENST00000540304 TBC1D2Q9BYX2 928 aa11.83□□□□□ -0.52
CLIP1-212ENST00000540304 IL1RAPL2Q9NP60 686 aa11.83□□□□□ -0.52
CLIP1-212ENST00000540304 PLBD2Q8NHP8 589 aa11.83□□□□□ -0.52
CLIP1-212ENST00000540304 NBPF26B4DH59 902 aa11.82□□□□□ -0.52
CLIP1-212ENST00000540304 PTCD1O75127 700 aaKnown RBP11.82□□□□□ -0.52
CLIP1-212ENST00000540304 NBPF14Q5TI25 921 aa11.82□□□□□ -0.52
CLIP1-212ENST00000540304 NBPF10Q6P3W6 841 aaKnown RBP11.82□□□□□ -0.52
CLIP1-212ENST00000540304 NBPF15Q8N660 670 aa11.82□□□□□ -0.52
CLIP1-212ENST00000540304 SPRYD3Q8NCJ5 442 aa11.82□□□□□ -0.52
CLIP1-212ENST00000540304 KAZALD1Q96I82 304 aa11.82□□□□□ -0.52
CLIP1-212ENST00000540304 HSP90AA1P07900 732 aaKnown RBP11.82□□□□□ -0.52
CLIP1-212ENST00000540304 BICC1Q9H694 974 aaKnown RBP11.82□□□□□ -0.52
CLIP1-212ENST00000540304 OS9Q13438 667 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-212ENST00000540304 CNKSR2Q8WXI2 1034 aa11.81□□□□□ -0.52
CLIP1-212ENST00000540304 ERC1Q8IUD2 1116 aa11.81□□□□□ -0.52
CLIP1-212ENST00000540304 SLKQ9H2G2 1235 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-212ENST00000540304 COL15A1P39059 1388 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 TOM1O60784 492 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 NUTM1Q86Y26 1132 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 PLCD3Q8N3E9 789 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 AK9Q5TCS8 1911 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 ADAMTS2O95450 1211 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 A1BGP04217 495 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 PIGBQ92521 554 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 NWD2Q9ULI1 1742 aa11.8□□□□□ -0.52
CLIP1-212ENST00000540304 EXOC5O00471 708 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 PLCB2Q00722 1185 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 HSCBQ8IWL3 235 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 KIF2CQ99661 725 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 CDCA7Q9BWT1 371 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-212ENST00000540304 ERC2O15083 957 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 REC8O95072 547 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 SNX21Q969T3 373 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 TEX13AQ9BXU3 409 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-212ENST00000540304 ASAP1Q9ULH1 1129 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 BCL9O00512 1426 aa11.79□□□□□ -0.52
CLIP1-212ENST00000540304 TRIM6-TRIM34B2RNG4 842 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 CLASRPQ8N2M8 674 aaKnown RBP11.78□□□□□ -0.52
CLIP1-212ENST00000540304 DOT1LQ8TEK3 1739 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 USP26Q9BXU7 913 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 ATG3Q9NT62 314 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 PA2G4Q9UQ80 394 aaKnown RBP11.78□□□□□ -0.52
CLIP1-212ENST00000540304 THRAP3Q9Y2W1 955 aaKnown RBP11.78□□□□□ -0.52
CLIP1-212ENST00000540304 USP42Q9H9J4 1324 aaKnown RBP11.78□□□□□ -0.52
CLIP1-212ENST00000540304 TJP1Q07157 1748 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 ATP5J2-PTCD1G3V325 749 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 TTLL7Q6ZT98 887 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 PI4K2BQ8TCG2 481 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 SPATA31A1Q5TZJ5 1347 aa11.78□□□□□ -0.52
CLIP1-212ENST00000540304 PIP4K2BP78356 416 aa11.77□□□□□ -0.52
CLIP1-212ENST00000540304 UBE3BQ7Z3V4 1068 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms