RNA–Protein interactions for RNA: ENST00000539687.5

SPARC-209, Transcript of secreted protein acidic and cysteine rich, humanhuman

TSL 5

Gene SPARC, Length 511 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPARC-209ENST00000539687 HSCBQ8IWL3 235 aa12.5□□□□□ -0.41
SPARC-209ENST00000539687 VSIG10Q8N0Z9 540 aa12.5□□□□□ -0.41
SPARC-209ENST00000539687 GPATCH3Q96I76 525 aa12.5□□□□□ -0.41
SPARC-209ENST00000539687 EXOC6BQ9Y2D4 811 aa12.5□□□□□ -0.41
SPARC-209ENST00000539687 UBR2Q8IWV8 1755 aa12.5□□□□□ -0.41
SPARC-209ENST00000539687 COL16A1Q07092 1604 aaPredicted RBP12.49□□□□□ -0.41
SPARC-209ENST00000539687 GSPT1P15170 499 aaKnown RBP12.49□□□□□ -0.41
SPARC-209ENST00000539687 MEX3CQ5U5Q3 659 aaKnown RBP12.49□□□□□ -0.41
SPARC-209ENST00000539687 PLBD2Q8NHP8 589 aa12.49□□□□□ -0.41
SPARC-209ENST00000539687 SNX21Q969T3 373 aa12.49□□□□□ -0.41
SPARC-209ENST00000539687 BTG4Q9NY30 223 aa12.49□□□□□ -0.41
SPARC-209ENST00000539687 TMOD3Q9NYL9 352 aa12.49□□□□□ -0.41
SPARC-209ENST00000539687 THRAP3Q9Y2W1 955 aaKnown RBP12.49□□□□□ -0.41
SPARC-209ENST00000539687 DISP2A7MBM2 1401 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 TTC41PQ6P2S7 1318 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 SALL3Q9BXA9 1300 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 NBPF7P0C2Y1 421 aaPredicted RBP12.48□□□□□ -0.41
SPARC-209ENST00000539687 PROSER3Q2NL68 480 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 ZNF772Q68DY9 489 aaPredicted RBP12.48□□□□□ -0.41
SPARC-209ENST00000539687 COPS6Q7L5N1 327 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 XAGE3Q8WTP9 111 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 SHANK3Q9BYB0 1731 aa12.48□□□□□ -0.41
SPARC-209ENST00000539687 KCPQ6ZWJ8 1503 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 NEURL1BA8MQ27 555 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 APBB1O00213 710 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 ERC2O15083 957 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 SMARCA5O60264 1052 aaPredicted RBP12.47□□□□□ -0.41
SPARC-209ENST00000539687 ANXA1P04083 346 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 SDSP20132 328 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 AIMP1Q12904 312 aaKnown RBP12.47□□□□□ -0.41
SPARC-209ENST00000539687 OS9Q13438 667 aaPredicted RBP12.47□□□□□ -0.41
SPARC-209ENST00000539687 CLASRPQ8N2M8 674 aaKnown RBP12.47□□□□□ -0.41
SPARC-209ENST00000539687 RHPN1Q8TCX5 695 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 GLI3P10071 1580 aa12.47□□□□□ -0.41
SPARC-209ENST00000539687 USP42Q9H9J4 1324 aaKnown RBP12.46□□□□□ -0.41
SPARC-209ENST00000539687 PRAMEF22A3QJZ6 481 aa12.46□□□□□ -0.41
SPARC-209ENST00000539687 MYL6BP14649 208 aa12.46□□□□□ -0.41
SPARC-209ENST00000539687 MCCP23508 829 aa12.46□□□□□ -0.41
SPARC-209ENST00000539687 GCKRQ14397 625 aa12.46□□□□□ -0.41
SPARC-209ENST00000539687 C16orf71Q8IYS4 520 aaPredicted RBP12.46□□□□□ -0.41
SPARC-209ENST00000539687 DDX54Q8TDD1 881 aaKnown RBP12.46□□□□□ -0.41
SPARC-209ENST00000539687 USP16Q9Y5T5 823 aa12.46□□□□□ -0.41
SPARC-209ENST00000539687 SPATA31A6Q5VVP1 1343 aa12.45□□□□□ -0.42
SPARC-209ENST00000539687 EXOC5O00471 708 aa12.45□□□□□ -0.42
SPARC-209ENST00000539687 RABEP1Q15276 862 aa12.45□□□□□ -0.42
SPARC-209ENST00000539687 LRP10Q7Z4F1 713 aa12.45□□□□□ -0.42
SPARC-209ENST00000539687 WNK3Q9BYP7 1800 aa12.44□□□□□ -0.42
SPARC-209ENST00000539687 GLRX3O76003 335 aaKnown RBP12.44□□□□□ -0.42
SPARC-209ENST00000539687 STARD3NLO95772 234 aa12.44□□□□□ -0.42
SPARC-209ENST00000539687 RXRBP28702 533 aa12.44□□□□□ -0.42
SPARC-209ENST00000539687 G3BP1Q13283 466 aaKnown RBP eCLIP12.44□□□□□ -0.42
SPARC-209ENST00000539687 CWF19L2Q2TBE0 894 aaKnown RBP12.44□□□□□ -0.42
SPARC-209ENST00000539687 CNTROBQ8N137 903 aa12.44□□□□□ -0.42
SPARC-209ENST00000539687 MYD88Q99836 296 aa12.44□□□□□ -0.42
SPARC-209ENST00000539687 TBC1D2Q9BYX2 928 aa12.44□□□□□ -0.42
SPARC-209ENST00000539687 IGKV5-2P06315 115 aa12.43□□□□□ -0.42
SPARC-209ENST00000539687 OTUD7AQ8TE49 926 aaPredicted RBP12.43□□□□□ -0.42
SPARC-209ENST00000539687 ARFGEF2Q9Y6D5 1785 aa12.43□□□□□ -0.42
SPARC-209ENST00000539687 NWD2Q9ULI1 1742 aa12.42□□□□□ -0.42
SPARC-209ENST00000539687 IFIT2P09913 472 aaKnown RBP12.42□□□□□ -0.42
SPARC-209ENST00000539687 HSP90AB3PQ58FF7 597 aa12.42□□□□□ -0.42
SPARC-209ENST00000539687 SUCLG2Q96I99 432 aa12.42□□□□□ -0.42
SPARC-209ENST00000539687 TRIM6-TRIM34B2RNG4 842 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 HIP1O00291 1037 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 ST18O60284 1047 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 RABL6Q3YEC7 729 aaPredicted RBP12.41□□□□□ -0.42
SPARC-209ENST00000539687 KIF6Q6ZMV9 814 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 CCDC191Q8NCU4 936 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 RUFY2Q8WXA3 655 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 USP26Q9BXU7 913 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 BICC1Q9H694 974 aaKnown RBP12.41□□□□□ -0.42
SPARC-209ENST00000539687 COPRSQ9NQ92 184 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 ECHDC1Q9NTX5 307 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 CWC25Q9NXE8 425 aaPredicted RBP12.41□□□□□ -0.42
SPARC-209ENST00000539687 TOGARAM1Q9Y4F4 1720 aa12.41□□□□□ -0.42
SPARC-209ENST00000539687 NRAPQ86VF7 1730 aa12.4□□□□□ -0.42
SPARC-209ENST00000539687 BCL9O00512 1426 aa12.4□□□□□ -0.42
SPARC-209ENST00000539687 SLC4A3P48751 1232 aa12.4□□□□□ -0.42
SPARC-209ENST00000539687 MCM2P49736 904 aa12.4□□□□□ -0.42
SPARC-209ENST00000539687 ANAPC15P60006 121 aa12.4□□□□□ -0.42
SPARC-209ENST00000539687 IL1RAPL2Q9NP60 686 aa12.4□□□□□ -0.42
SPARC-209ENST00000539687 CIZ1Q9ULV3 898 aaPredicted RBP12.4□□□□□ -0.42
SPARC-209ENST00000539687 SPATA31A1Q5TZJ5 1347 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 AFDNP55196 1824 aaKnown RBP12.39□□□□□ -0.43
SPARC-209ENST00000539687 TUBGCP6Q96RT7 1819 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 A0A087WZG4 1122 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 TRIM28Q13263 835 aaKnown RBP12.39□□□□□ -0.43
SPARC-209ENST00000539687 NBR1Q14596 966 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 BARGINQ6ZT62 677 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 TICAM2Q86XR7 235 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 RILPL2Q969X0 211 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 ESYT1Q9BSJ8 1104 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 ATG3Q9NT62 314 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 CHMP5Q9NZZ3 219 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 FBXO3Q9UK99 471 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 NUP188Q5SRE5 1749 aa12.39□□□□□ -0.43
SPARC-209ENST00000539687 NUTM2BA6NNL0 878 aaPredicted RBP12.38□□□□□ -0.43
SPARC-209ENST00000539687 NUTM2EB1AL46 878 aaPredicted RBP12.38□□□□□ -0.43
SPARC-209ENST00000539687 NBPF26B4DH59 902 aa12.38□□□□□ -0.43
SPARC-209ENST00000539687 H7C1W4 665 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms