RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 HSP90AB1P08238 724 aaKnown RBP8.29□□□□□ -1.08
USP28-207ENST00000538475 HMGN5P82970 282 aaKnown RBP8.29□□□□□ -1.08
USP28-207ENST00000538475 C4orf48Q5BLP8 95 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 PDXDC2PQ6P474 469 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 SH3BP5LQ7L8J4 393 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 SKAP1Q86WV1 359 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 PRIMPOLQ96LW4 560 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 ARHGAP9Q9BRR9 750 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 HMX1Q9NP08 348 aaPredicted RBP8.29□□□□□ -1.08
USP28-207ENST00000538475 ADGRL1O94910 1474 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 USP32Q8NFA0 1604 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 URB2Q14146 1524 aaKnown RBP8.29□□□□□ -1.08
USP28-207ENST00000538475 C9orf84Q5VXU9 1444 aa8.29□□□□□ -1.08
USP28-207ENST00000538475 POLR3AO14802 1390 aaPredicted RBP8.28□□□□□ -1.08
USP28-207ENST00000538475 ADH1CP00326 375 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 NNTQ13423 1086 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 HDAC1Q13547 482 aaPredicted RBP8.28□□□□□ -1.08
USP28-207ENST00000538475 CCDC27Q2M243 656 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 SH3RF1Q7Z6J0 888 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 ZBTB33Q86T24 672 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 WDR63Q8IWG1 891 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 EPS8L1Q8TE68 723 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 CFDP1Q9UEE9 299 aaPredicted RBP8.28□□□□□ -1.08
USP28-207ENST00000538475 CCDC39Q9UFE4 941 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 AK9Q5TCS8 1911 aa8.28□□□□□ -1.08
USP28-207ENST00000538475 ZC3H4Q9UPT8 1303 aaKnown RBP8.28□□□□□ -1.08
USP28-207ENST00000538475 TTC37Q6PGP7 1564 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 A2MP01023 1474 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 DISP3Q9P2K9 1392 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 PTK2Q05397 1052 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 TNPO1Q92973 898 aaKnown RBP8.27□□□□□ -1.09
USP28-207ENST00000538475 ZNF775Q96BV0 537 aaPredicted RBP8.27□□□□□ -1.09
USP28-207ENST00000538475 CDK15Q96Q40 435 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 GZF1Q9H116 711 aaPredicted RBP8.27□□□□□ -1.09
USP28-207ENST00000538475 DACH1Q9UI36 760 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 ZKSCAN5Q9Y2L8 839 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 CLTCL1P53675 1640 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 SHPRHQ149N8 1683 aa8.27□□□□□ -1.09
USP28-207ENST00000538475 MADDQ8WXG6 1647 aa8.26□□□□□ -1.09
USP28-207ENST00000538475 CAPN5O15484 640 aaPredicted RBP8.26□□□□□ -1.09
USP28-207ENST00000538475 CANXP27824 592 aaKnown RBP8.26□□□□□ -1.09
USP28-207ENST00000538475 GTF2F1P35269 517 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP28-207ENST00000538475 FAM193AP78312 1265 aa8.26□□□□□ -1.09
USP28-207ENST00000538475 NUCB2P80303 420 aa8.26□□□□□ -1.09
USP28-207ENST00000538475 CC2D1BQ5T0F9 858 aaKnown RBP8.26□□□□□ -1.09
USP28-207ENST00000538475 VASH1Q7L8A9 365 aaPredicted RBP8.26□□□□□ -1.09
USP28-207ENST00000538475 CHMP4BQ9H444 224 aaKnown RBP8.26□□□□□ -1.09
USP28-207ENST00000538475 CFAP74Q9C0B2 1584 aa8.26□□□□□ -1.09
USP28-207ENST00000538475 MAGI2Q86UL8 1455 aa8.26□□□□□ -1.09
USP28-207ENST00000538475 DISP1Q96F81 1524 aa8.25□□□□□ -1.09
USP28-207ENST00000538475 UQCRHLA0A096LP55 91 aa8.25□□□□□ -1.09
USP28-207ENST00000538475 UQCRHP07919 91 aa8.25□□□□□ -1.09
USP28-207ENST00000538475 NR5A1Q13285 461 aa8.25□□□□□ -1.09
USP28-207ENST00000538475 GAS2L3Q86XJ1 694 aa8.25□□□□□ -1.09
USP28-207ENST00000538475 SCAF11Q99590 1463 aaKnown RBP8.25□□□□□ -1.09
USP28-207ENST00000538475 MYO3AQ8NEV4 1616 aa8.25□□□□□ -1.09
USP28-207ENST00000538475 POTECB2RU33 542 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 CNGB1Q14028 1251 aaPredicted RBP8.24□□□□□ -1.09
USP28-207ENST00000538475 ERFEQ4G0M1 354 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 BANK1Q8NDB2 785 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 SLC10A4Q96EP9 437 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 C1QTNF2Q9BXJ5 285 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 CWC22Q9HCG8 908 aaKnown RBP8.24□□□□□ -1.09
USP28-207ENST00000538475 ATP13A2Q9NQ11 1180 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 GMPR2Q9P2T1 348 aaKnown RBP8.24□□□□□ -1.09
USP28-207ENST00000538475 IFT140Q96RY7 1462 aa8.24□□□□□ -1.09
USP28-207ENST00000538475 PREX2Q70Z35 1606 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 BCAR3O75815 825 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 TSPY4P0CV99 314 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 TSPY10P0CW01 314 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 FSHRP23945 695 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 RARSP54136 660 aaKnown RBP8.23□□□□□ -1.09
USP28-207ENST00000538475 WDR4P57081 412 aaKnown RBP8.23□□□□□ -1.09
USP28-207ENST00000538475 TRMT44Q8IYL2 757 aaKnown RBP8.23□□□□□ -1.09
USP28-207ENST00000538475 MYRIPQ8NFW9 859 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 FAM13BQ9NYF5 915 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 R3HCC1Q9Y3T6 440 aaKnown RBP8.23□□□□□ -1.09
USP28-207ENST00000538475 GPSM3Q9Y4H4 160 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 IQSEC2Q5JU85 1478 aa8.23□□□□□ -1.09
USP28-207ENST00000538475 ZNF644Q9H582 1327 aaPredicted RBP8.23□□□□□ -1.09
USP28-207ENST00000538475 PDS5BQ9NTI5 1447 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 K7ELQ4 463 aaPredicted RBP8.22□□□□□ -1.09
USP28-207ENST00000538475 APBB1O00213 710 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 GRM5P41594 1212 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 MVPQ14764 893 aaKnown RBP8.22□□□□□ -1.09
USP28-207ENST00000538475 UVSSAQ2YD98 709 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 TRIM34Q9BYJ4 488 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 DDX19BQ9UMR2 479 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 COG6Q9Y2V7 657 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 MAP4K5Q9Y4K4 846 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 ADGRB2O60241 1585 aa8.22□□□□□ -1.09
USP28-207ENST00000538475 PPRC1Q5VV67 1664 aaKnown RBP8.21□□□□□ -1.09
USP28-207ENST00000538475 CDC42BPBQ9Y5S2 1711 aa8.21□□□□□ -1.09
USP28-207ENST00000538475 APAF1O14727 1248 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 ZSCAN20P17040 1043 aaPredicted RBP8.21□□□□□ -1.1
USP28-207ENST00000538475 BMP2KLQ5H9B9 411 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 ZKSCAN2Q63HK3 967 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 CREBRFQ8IUR6 639 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 WWC1Q8IX03 1113 aa8.21□□□□□ -1.1
USP28-207ENST00000538475 ADAM32Q8TC27 787 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms