RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 LTBP3Q9NS15 1303 aa18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 CAMTA2O94983 1202 aa18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 PIP4K2AP48426 406 aaPredicted RBP18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 ST5P78524 1137 aa18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 CHADLQ6NUI6 762 aa18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 CNKSR1Q969H4 720 aa18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 MKRN1Q9UHC7 482 aaKnown RBP18.86■□□□□ 0.61
SMARCA4-206ENST00000538456 KCNQ3O43525 872 aa18.85■□□□□ 0.61
SMARCA4-206ENST00000538456 SRGNP10124 158 aa18.85■□□□□ 0.61
SMARCA4-206ENST00000538456 STYK1Q6J9G0 422 aa18.85■□□□□ 0.61
SMARCA4-206ENST00000538456 DZIP3Q86Y13 1208 aaKnown RBP18.85■□□□□ 0.61
SMARCA4-206ENST00000538456 CREBZFQ9NS37 354 aa18.84■□□□□ 0.61
SMARCA4-206ENST00000538456 CEMIPQ8WUJ3 1361 aa18.83■□□□□ 0.61
SMARCA4-206ENST00000538456 BTBD11A6QL63 1104 aa18.83■□□□□ 0.6
SMARCA4-206ENST00000538456 MASTLQ96GX5 879 aa18.83■□□□□ 0.6
SMARCA4-206ENST00000538456 SOGA3Q5TF21 947 aa18.82■□□□□ 0.6
SMARCA4-206ENST00000538456 SCN4AP35499 1836 aa18.81■□□□□ 0.6
SMARCA4-206ENST00000538456 PRKAR2BP31323 418 aa18.81■□□□□ 0.6
SMARCA4-206ENST00000538456 NBPF5PQ86XG9 351 aaPredicted RBP18.81■□□□□ 0.6
SMARCA4-206ENST00000538456 PHACTR3Q96KR7 559 aa18.81■□□□□ 0.6
SMARCA4-206ENST00000538456 USP16Q9Y5T5 823 aa18.81■□□□□ 0.6
SMARCA4-206ENST00000538456 PRAMEF22A3QJZ6 481 aa18.8■□□□□ 0.6
SMARCA4-206ENST00000538456 IQCA1LA6NCM1 817 aa18.79■□□□□ 0.6
SMARCA4-206ENST00000538456 CCDC93Q567U6 631 aa18.78■□□□□ 0.6
SMARCA4-206ENST00000538456 ZNF652Q9Y2D9 606 aa18.78■□□□□ 0.6
SMARCA4-206ENST00000538456 NPC1L1Q9UHC9 1359 aa18.78■□□□□ 0.6
SMARCA4-206ENST00000538456 ZNF541Q9H0D2 1346 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 FAM177BA6PVY3 158 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 EAPPQ56P03 285 aaPredicted RBP18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 OLFM4Q6UX06 510 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 LDHDQ86WU2 507 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 C7orf43Q8WVR3 580 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 RSPH6AQ9H0K4 717 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 TAF1DQ9H5J8 278 aaPredicted RBP18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 ZNF277Q9NRM2 450 aaPredicted RBP18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 CNTNAP1P78357 1384 aa18.77■□□□□ 0.6
SMARCA4-206ENST00000538456 NPR1P16066 1061 aa18.76■□□□□ 0.59
SMARCA4-206ENST00000538456 CLEC4GQ6UXB4 293 aa18.76■□□□□ 0.59
SMARCA4-206ENST00000538456 MCM10Q7L590 875 aa18.76■□□□□ 0.59
SMARCA4-206ENST00000538456 L3MBTL3Q96JM7 780 aaPredicted RBP18.76■□□□□ 0.59
SMARCA4-206ENST00000538456 PASKQ96RG2 1323 aa18.75■□□□□ 0.59
SMARCA4-206ENST00000538456 FOXN1O15353 648 aa18.75■□□□□ 0.59
SMARCA4-206ENST00000538456 SNRPA1P09661 255 aaKnown RBP18.75■□□□□ 0.59
SMARCA4-206ENST00000538456 FKBP4Q02790 459 aaKnown RBP eCLIP18.75■□□□□ 0.59
SMARCA4-206ENST00000538456 NIP7Q9Y221 180 aaKnown RBP eCLIP18.75■□□□□ 0.59
SMARCA4-206ENST00000538456 RTF1Q92541 710 aaKnown RBP18.74■□□□□ 0.59
SMARCA4-206ENST00000538456 CFAP53Q96M91 514 aa18.74■□□□□ 0.59
SMARCA4-206ENST00000538456 NBPF26B4DH59 902 aa18.73■□□□□ 0.59
SMARCA4-206ENST00000538456 NBPF10Q6P3W6 841 aaKnown RBP18.73■□□□□ 0.59
SMARCA4-206ENST00000538456 TPTE2Q6XPS3 522 aa18.73■□□□□ 0.59
SMARCA4-206ENST00000538456 NBPF15Q8N660 670 aa18.73■□□□□ 0.59
SMARCA4-206ENST00000538456 CLEC11AQ9Y240 323 aa18.73■□□□□ 0.59
SMARCA4-206ENST00000538456 ADAMTSL1Q8N6G6 1762 aa18.73■□□□□ 0.59
SMARCA4-206ENST00000538456 TMEM88BA6NKF7 163 aa18.72■□□□□ 0.59
SMARCA4-206ENST00000538456 DCTN1Q14203 1278 aa18.72■□□□□ 0.59
SMARCA4-206ENST00000538456 HACL1Q9UJ83 578 aa18.72■□□□□ 0.59
SMARCA4-206ENST00000538456 LAMB4A4D0S4 1761 aa18.72■□□□□ 0.59
SMARCA4-206ENST00000538456 RNF123Q5XPI4 1314 aa18.72■□□□□ 0.59
SMARCA4-206ENST00000538456 ITGBL1O95965 494 aaPredicted RBP18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 U2AF1L5P0DN76 240 aaPredicted RBP18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 EPHX2P34913 555 aa18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 VEGFBP49765 207 aa18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 U2AF1Q01081 240 aaKnown RBP eCLIP18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 RTKN2Q8IZC4 609 aa18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 AIDAQ96BJ3 306 aa18.71■□□□□ 0.59
SMARCA4-206ENST00000538456 KLRG2A4D1S0 409 aaPredicted RBP18.7■□□□□ 0.58
SMARCA4-206ENST00000538456 GTF2E1P29083 439 aaPredicted RBP18.7■□□□□ 0.58
SMARCA4-206ENST00000538456 HLFQ16534 295 aa18.7■□□□□ 0.58
SMARCA4-206ENST00000538456 NUDCQ9Y266 331 aa18.7■□□□□ 0.58
SMARCA4-206ENST00000538456 IARSP41252 1262 aaKnown RBP18.69■□□□□ 0.58
SMARCA4-206ENST00000538456 NUP98P52948 1817 aa18.68■□□□□ 0.58
SMARCA4-206ENST00000538456 MAP1SQ66K74 1059 aaPredicted RBP18.68■□□□□ 0.58
SMARCA4-206ENST00000538456 SYNE4Q8N205 404 aa18.68■□□□□ 0.58
SMARCA4-206ENST00000538456 NGEFQ8N5V2 710 aa18.68■□□□□ 0.58
SMARCA4-206ENST00000538456 ABCC12Q96J65 1359 aa18.68■□□□□ 0.58
SMARCA4-206ENST00000538456 ALDH1B1P30837 517 aa18.67■□□□□ 0.58
SMARCA4-206ENST00000538456 CTCFP49711 727 aaPredicted RBP18.67■□□□□ 0.58
SMARCA4-206ENST00000538456 PRDM10Q9NQV6 1147 aa18.67■□□□□ 0.58
SMARCA4-206ENST00000538456 MIS18AQ9NYP9 233 aa18.67■□□□□ 0.58
SMARCA4-206ENST00000538456 FZD9O00144 591 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 RGL2O15211 777 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 PNMA8AQ86V59 439 aaPredicted RBP18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 NUTM1Q86Y26 1132 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 CNTROBQ8N137 903 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 GPC2Q8N158 579 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 DLG5Q8TDM6 1919 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 COL4A5P29400 1685 aa18.66■□□□□ 0.58
SMARCA4-206ENST00000538456 LBX1P52954 281 aa18.65■□□□□ 0.58
SMARCA4-206ENST00000538456 JDP2Q8WYK2 163 aa18.65■□□□□ 0.58
SMARCA4-206ENST00000538456 GJA3Q9Y6H8 435 aa18.65■□□□□ 0.58
SMARCA4-206ENST00000538456 KDM3BQ7LBC6 1761 aa18.65■□□□□ 0.58
SMARCA4-206ENST00000538456 SNED1Q8TER0 1413 aa18.65■□□□□ 0.58
SMARCA4-206ENST00000538456 LTBP1Q14766 1721 aa18.64■□□□□ 0.57
SMARCA4-206ENST00000538456 PPP2R1AP30153 589 aa18.64■□□□□ 0.57
SMARCA4-206ENST00000538456 TAF7Q15545 349 aaPredicted RBP18.64■□□□□ 0.57
SMARCA4-206ENST00000538456 WBP1LQ9NX94 342 aa18.64■□□□□ 0.57
SMARCA4-206ENST00000538456 ABT1Q9ULW3 272 aaKnown RBP18.64■□□□□ 0.57
SMARCA4-206ENST00000538456 DEFB115Q30KQ5 88 aa18.63■□□□□ 0.57
SMARCA4-206ENST00000538456 CRY2Q49AN0 593 aa18.63■□□□□ 0.57
SMARCA4-206ENST00000538456 PSMD1Q99460 953 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms