RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 DCTN1Q14203 1278 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 DUSP27Q5VZP5 1158 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 TRMT2AQ8IZ69 625 aaKnown RBP13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 THUMPD2Q9BTF0 503 aaKnown RBP13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 LAS1LQ9Y4W2 734 aaKnown RBP13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 SPATA31A5Q5VU36 1347 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 SPATA31A7Q8IWB4 1347 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 BRWD3Q6RI45 1802 aa13.06□□□□□ -0.32
NPIPB3-209ENST00000538439 NRAPQ86VF7 1730 aa13.05□□□□□ -0.32
NPIPB3-209ENST00000538439 PHKG2P15735 406 aa13.05□□□□□ -0.32
NPIPB3-209ENST00000538439 ZMYND15Q9H091 742 aa13.05□□□□□ -0.32
NPIPB3-209ENST00000538439 IFT57Q9NWB7 429 aa13.05□□□□□ -0.32
NPIPB3-209ENST00000538439 PCDH11XQ9BZA7 1347 aa13.05□□□□□ -0.32
NPIPB3-209ENST00000538439 PCDH11YQ9BZA8 1340 aa13.05□□□□□ -0.32
NPIPB3-209ENST00000538439 DLG5Q8TDM6 1919 aa13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 EXOC5O00471 708 aa13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 ONECUT3O60422 494 aaPredicted RBP13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 DOK7Q18PE1 504 aa13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 IL17REQ8NFR9 667 aa13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 TMUB1Q9BVT8 246 aa13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 REPIN1Q9BWE0 567 aaKnown RBP13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 PARP4Q9UKK3 1724 aaKnown RBP13.04□□□□□ -0.32
NPIPB3-209ENST00000538439 RNMTO43148 476 aaKnown RBP13.03□□□□□ -0.32
NPIPB3-209ENST00000538439 OATP04181 439 aa13.03□□□□□ -0.32
NPIPB3-209ENST00000538439 MDM2Q00987 491 aaPredicted RBP13.03□□□□□ -0.32
NPIPB3-209ENST00000538439 TEFQ10587 303 aa13.03□□□□□ -0.32
NPIPB3-209ENST00000538439 MPRIPQ6WCQ1 1025 aa13.03□□□□□ -0.32
NPIPB3-209ENST00000538439 ZDHHC16Q969W1 377 aa13.03□□□□□ -0.32
NPIPB3-209ENST00000538439 RIMBP2O15034 1052 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 CYP27B1O15528 508 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 ZNF853P0CG23 659 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 TAF7Q15545 349 aaPredicted RBP13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 C6orf132Q5T0Z8 1188 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 HOMEZQ8IX15 550 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 ZNF454Q8N9F8 522 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 DDX54Q8TDD1 881 aaKnown RBP13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 DCAF5Q96JK2 942 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 PCMTD1Q96MG8 357 aaPredicted RBP13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 LGR6Q9HBX8 967 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 BABAM1Q9NWV8 329 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 RBM27Q9P2N5 1060 aaKnown RBP13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 DISP2A7MBM2 1401 aa13.02□□□□□ -0.33
NPIPB3-209ENST00000538439 CHL1O00533 1208 aa13.01□□□□□ -0.33
NPIPB3-209ENST00000538439 DDB1Q16531 1140 aa13.01□□□□□ -0.33
NPIPB3-209ENST00000538439 TSR2Q969E8 191 aaKnown RBP13.01□□□□□ -0.33
NPIPB3-209ENST00000538439 FANCIQ9NVI1 1328 aa13.01□□□□□ -0.33
NPIPB3-209ENST00000538439 PKD1L3Q7Z443 1732 aa13.01□□□□□ -0.33
NPIPB3-209ENST00000538439 CEMIPQ8WUJ3 1361 aa13□□□□□ -0.33
NPIPB3-209ENST00000538439 FLIIQ13045 1269 aa13□□□□□ -0.33
NPIPB3-209ENST00000538439 ZSWIM6Q9HCJ5 1215 aa13□□□□□ -0.33
NPIPB3-209ENST00000538439 MBIPQ9NS73 344 aa13□□□□□ -0.33
NPIPB3-209ENST00000538439 TSPYL4Q9UJ04 414 aa13□□□□□ -0.33
NPIPB3-209ENST00000538439 A0A0G2JS52 829 aa12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 CT47B1P0C2W7 299 aaPredicted RBP12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 MYT1Q01538 1121 aa12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 FAM98CQ17RN3 349 aaKnown RBP12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 SH3D19Q5HYK7 790 aa12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 PADI6Q6TGC4 694 aa12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 METTL3Q86U44 580 aaKnown RBP12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 PHOX2BQ99453 314 aa12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 RCAN3Q9UKA8 241 aa12.99□□□□□ -0.33
NPIPB3-209ENST00000538439 PSDA5PKW4 1024 aaPredicted RBP12.98□□□□□ -0.33
NPIPB3-209ENST00000538439 NUDT7P0C024 238 aa12.98□□□□□ -0.33
NPIPB3-209ENST00000538439 SSTR3P32745 418 aaPredicted RBP12.98□□□□□ -0.33
NPIPB3-209ENST00000538439 EXOSC9Q06265 439 aaKnown RBP12.98□□□□□ -0.33
NPIPB3-209ENST00000538439 TNS2Q63HR2 1409 aa12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 BTBD11A6QL63 1104 aa12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 ERVV-2B6SEH9 535 aa12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 CABP4P57796 275 aa12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 SLC52A2Q9HAB3 445 aa12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 SUPT16HQ9Y5B9 1047 aaKnown RBP12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 ADGRG1Q9Y653 693 aa12.97□□□□□ -0.33
NPIPB3-209ENST00000538439 SEPT12Q8IYM1 358 aa12.96□□□□□ -0.33
NPIPB3-209ENST00000538439 MIS18AQ9NYP9 233 aa12.96□□□□□ -0.33
NPIPB3-209ENST00000538439 KDM6AO15550 1401 aaPredicted RBP12.96□□□□□ -0.34
NPIPB3-209ENST00000538439 WNK3Q9BYP7 1800 aa12.95□□□□□ -0.34
NPIPB3-209ENST00000538439 ARSIQ5FYB1 569 aa12.95□□□□□ -0.34
NPIPB3-209ENST00000538439 TTC13Q8NBP0 860 aa12.95□□□□□ -0.34
NPIPB3-209ENST00000538439 PXYLP1Q8TE99 480 aa12.95□□□□□ -0.34
NPIPB3-209ENST00000538439 ZNF428Q96B54 188 aa12.95□□□□□ -0.34
NPIPB3-209ENST00000538439 LRRC37A3O60309 1634 aa12.95□□□□□ -0.34
NPIPB3-209ENST00000538439 TWISTNBQ3B726 338 aaPredicted RBP12.94□□□□□ -0.34
NPIPB3-209ENST00000538439 NFATC2IPQ8NCF5 419 aa12.94□□□□□ -0.34
NPIPB3-209ENST00000538439 FAM217BQ9NTX9 383 aaPredicted RBP12.94□□□□□ -0.34
NPIPB3-209ENST00000538439 ADAMTS7Q9UKP4 1686 aa12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 NEFLP07196 543 aa12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 HOXB3P14651 431 aaPredicted RBP12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 FAM161AQ3B820 660 aa12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 CHMP4AQ9BY43 222 aa12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 ADAM33Q9BZ11 813 aa12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 SCN11AQ9UI33 1791 aa12.93□□□□□ -0.34
NPIPB3-209ENST00000538439 SOS1Q07889 1333 aaPredicted RBP12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 ELL2O00472 640 aaPredicted RBP12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 VAMP4O75379 141 aa12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 PRSS12P56730 875 aa12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 TTC5Q8N0Z6 440 aa12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 MARCH10Q8NA82 808 aaPredicted RBP12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 C8orf58Q8NAV2 365 aa12.92□□□□□ -0.34
NPIPB3-209ENST00000538439 KHSRPQ92945 711 aaKnown RBP eCLIP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms