RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-234	ENST00000536990	VSIG10	Q8N0Z9	540 aa		13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	LMO7	Q8WWI1	1683 aa		13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	RNMT	O43148	476 aa	Known RBP	13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	ZSCAN22	P10073	491 aa	Predicted RBP	13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	UVSSA	Q2YD98	709 aa		13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	DBF4	Q9UBU7	674 aa	Predicted RBP	13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	CNPY2	Q9Y2B0	182 aa		13.9	□□□□□ -0.18
SYNE1-234	ENST00000536990	USP42	Q9H9J4	1324 aa	Known RBP	13.9	□□□□□ -0.19
SYNE1-234	ENST00000536990	FAM184A	Q8NB25	1140 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	UQCRHL	A0A096LP55	91 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	UQCRH	P07919	91 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	TRH	P20396	242 aa	Predicted RBP	13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	RBM10	P98175	930 aa	Known RBP	13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	CCDC183	Q5T5S1	534 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	ARHGEF25	Q86VW2	580 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	CNTROB	Q8N137	903 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	LIMCH1	Q9UPQ0	1083 aa		13.89	□□□□□ -0.19
SYNE1-234	ENST00000536990	LMOD2	Q6P5Q4	547 aa		13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	ADCY9	O60503	1353 aa		13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	SYT1	P21579	422 aa		13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	OS9	Q13438	667 aa	Predicted RBP	13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	ORAI2	Q96SN7	254 aa		13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	STX6	O43752	255 aa		13.88	□□□□□ -0.19
SYNE1-234	ENST00000536990	PTMA	P06454	111 aa	Known RBP	13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	ANKRD24	Q8TF21	1146 aa		13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	LARP6	Q9BRS8	491 aa	Known RBP	13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	SASS6	Q6UVJ0	657 aa		13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	MAP3K2	Q9Y2U5	619 aa		13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	NCAPD2	Q15021	1401 aa		13.87	□□□□□ -0.19
SYNE1-234	ENST00000536990	GIGYF1	O75420	1035 aa	Predicted RBP	13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	F13A1	P00488	732 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	UBE2H	P62256	183 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	CWC27	Q6UX04	472 aa	Known RBP	13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	SPG7	Q9UQ90	795 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	TTC41P	Q6P2S7	1318 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	ALDH1L1	O75891	902 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	LARGE1	O95461	756 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	KIAA2012	Q0VF49	1180 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	HYPK	Q9NX55	129 aa		13.86	□□□□□ -0.19
SYNE1-234	ENST00000536990	DYNC1I1	O14576	645 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	MTX1	Q13505	466 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	KSR2	Q6VAB6	950 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	ZMYND15	Q9H091	742 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	USP25	Q9UHP3	1055 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	HDAC5	Q9UQL6	1122 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	PXDN	Q92626	1479 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	LETM1	O95202	739 aa	Predicted RBP	13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	CPA1	P15085	419 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	CLASRP	Q8N2M8	674 aa	Known RBP	13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	MAP7D2	Q96T17	732 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	FAM13B	Q9NYF5	915 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	SMC3	Q9UQE7	1217 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	GLRX3	O76003	335 aa	Known RBP	13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	KCNB2	Q92953	911 aa		13.85	□□□□□ -0.19
SYNE1-234	ENST00000536990	HCLS1	P14317	486 aa	Predicted RBP	13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	CAST	P20810	708 aa	Known RBP	13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	PROSER3	Q2NL68	480 aa		13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	FUCA2	Q9BTY2	467 aa		13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	ZNF142	P52746	1687 aa	Predicted RBP	13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	OVOS2	A0A0G2JMS6	1433 aa		13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	PTH1R	Q03431	593 aa		13.84	□□□□□ -0.19
SYNE1-234	ENST00000536990	SLIT3	O75094	1523 aa		13.83	□□□□□ -0.19
SYNE1-234	ENST00000536990	ADCY5	O95622	1261 aa		13.83	□□□□□ -0.19
SYNE1-234	ENST00000536990	VPS53	Q5VIR6	699 aa		13.83	□□□□□ -0.2
SYNE1-234	ENST00000536990	MTMR6	Q9Y217	621 aa		13.83	□□□□□ -0.2
SYNE1-234	ENST00000536990	AXIN2	Q9Y2T1	843 aa		13.83	□□□□□ -0.2
SYNE1-234	ENST00000536990	ATP6V1D	Q9Y5K8	247 aa		13.83	□□□□□ -0.2
SYNE1-234	ENST00000536990	HEG1	Q9ULI3	1381 aa		13.83	□□□□□ -0.2
SYNE1-234	ENST00000536990	PRAMEF22	A3QJZ6	481 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	FIBP	O43427	364 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	ST3GAL1	Q11201	340 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	CWF19L2	Q2TBE0	894 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	ADCK5	Q3MIX3	580 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	KRT28	Q7Z3Y7	464 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	ERC1	Q8IUD2	1116 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	KLHL34	Q8N239	644 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	PIBF1	Q8WXW3	757 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	TM6SF1	Q9BZW5	370 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	ZSWIM6	Q9HCJ5	1215 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	DIAPH3	Q9NSV4	1193 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	NPHP4	O75161	1426 aa	Predicted RBP	13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	GJB2	P29033	226 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	CCDC83	Q8IWF9	413 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	MPND	Q8N594	471 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	GPATCH3	Q96I76	525 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	ZNF830	Q96NB3	372 aa	Predicted RBP	13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	DDX58	O95786	925 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	RUFY2	Q8WXA3	655 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	JAKMIP1	Q96N16	626 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	ECHDC1	Q9NTX5	307 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	PDRG1	Q9NUG6	133 aa		13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	PA2G4	Q9UQ80	394 aa	Known RBP	13.82	□□□□□ -0.2
SYNE1-234	ENST00000536990	IFIT2	P09913	472 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-234	ENST00000536990	DNM1	Q05193	864 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-234	ENST00000536990	PRPF40B	Q6NWY9	871 aa	Known RBP	13.81	□□□□□ -0.2
SYNE1-234	ENST00000536990	LINS1	Q8NG48	757 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms