RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 LCE3BQ5TA77 95 aa6.42□□□□□ -1.38
SKA3-207ENST00000536239 LRRC69Q6ZNQ3 347 aa6.42□□□□□ -1.38
SKA3-207ENST00000536239 C8orf86Q6ZUL3 223 aa6.42□□□□□ -1.38
SKA3-207ENST00000536239 NBPF11Q86T75 865 aa6.42□□□□□ -1.38
SKA3-207ENST00000536239 PCDHGA11Q9Y5H2 935 aa6.42□□□□□ -1.38
SKA3-207ENST00000536239 EML1O00423 815 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 BACH1O14867 736 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 ALBP02768 609 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 NID1P14543 1247 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 SFSWAPQ12872 951 aaKnown RBP6.41□□□□□ -1.38
SKA3-207ENST00000536239 ZDHHC1Q8WTX9 485 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 C7orf43Q8WVR3 580 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 L3MBTL2Q969R5 705 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 SLC30A3Q99726 388 aa6.41□□□□□ -1.38
SKA3-207ENST00000536239 TEAD4Q15561 434 aa6.4□□□□□ -1.38
SKA3-207ENST00000536239 NEUROD4Q9HD90 331 aa6.4□□□□□ -1.38
SKA3-207ENST00000536239 SCHIP1Q9P0W5 487 aaPredicted RBP6.4□□□□□ -1.38
SKA3-207ENST00000536239 C9orf172C9J069 976 aa6.39□□□□□ -1.39
SKA3-207ENST00000536239 H2AFB1P0C5Y9 115 aa6.39□□□□□ -1.39
SKA3-207ENST00000536239 H2AFB2P0C5Z0 115 aa6.39□□□□□ -1.39
SKA3-207ENST00000536239 NOS2P35228 1153 aa6.39□□□□□ -1.39
SKA3-207ENST00000536239 SEMA3FQ13275 785 aa6.39□□□□□ -1.39
SKA3-207ENST00000536239 C20orf204Q6ZNR8 217 aa6.39□□□□□ -1.39
SKA3-207ENST00000536239 GPC6Q9Y625 555 aaPredicted RBP6.39□□□□□ -1.39
SKA3-207ENST00000536239 ADH7P40394 386 aa6.38□□□□□ -1.39
SKA3-207ENST00000536239 BRPF1P55201 1214 aaPredicted RBP6.38□□□□□ -1.39
SKA3-207ENST00000536239 ADGRE1Q14246 886 aa6.38□□□□□ -1.39
SKA3-207ENST00000536239 WASHC4Q2M389 1173 aa6.38□□□□□ -1.39
SKA3-207ENST00000536239 TRAPPC3LQ5T215 181 aa6.38□□□□□ -1.39
SKA3-207ENST00000536239 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.38□□□□□ -1.39
SKA3-207ENST00000536239 BCANQ96GW7 911 aa6.38□□□□□ -1.39
SKA3-207ENST00000536239 SPEM2Q0P670 501 aa6.37□□□□□ -1.39
SKA3-207ENST00000536239 NEUROD1Q13562 356 aa6.37□□□□□ -1.39
SKA3-207ENST00000536239 LRP8Q14114 963 aa6.37□□□□□ -1.39
SKA3-207ENST00000536239 GDPD2Q9HCC8 539 aa6.37□□□□□ -1.39
SKA3-207ENST00000536239 ZNF358Q9NW07 568 aa6.37□□□□□ -1.39
SKA3-207ENST00000536239 HYAL3O43820 417 aaPredicted RBP6.36□□□□□ -1.39
SKA3-207ENST00000536239 SELPP16109 830 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 SOX11P35716 441 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 ABL2P42684 1182 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 EPHA4P54764 986 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 MBTPS1Q14703 1052 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 EML3Q32P44 896 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 RAB44Q7Z6P3 723 aaPredicted RBP6.36□□□□□ -1.39
SKA3-207ENST00000536239 ZNF232Q9UNY5 417 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 NOD1Q9Y239 953 aa6.36□□□□□ -1.39
SKA3-207ENST00000536239 A0A0A0MRY4 1105 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 PIK3CDO00329 1044 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 LILRB5O75023 590 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 ELNP15502 786 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 GTF2IP78347 998 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 TBCELQ5QJ74 424 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 SLC9A9Q8IVB4 645 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 RHPN1Q8TCX5 695 aa6.35□□□□□ -1.39
SKA3-207ENST00000536239 LENG1Q96BZ8 264 aaPredicted RBP6.35□□□□□ -1.39
SKA3-207ENST00000536239 SERTM1A2A2V5 107 aa6.34□□□□□ -1.39
SKA3-207ENST00000536239 LZTS3O60299 673 aaPredicted RBP6.34□□□□□ -1.39
SKA3-207ENST00000536239 KCNQ4P56696 695 aa6.34□□□□□ -1.39
SKA3-207ENST00000536239 NRG1Q02297 640 aaPredicted RBP6.34□□□□□ -1.39
SKA3-207ENST00000536239 SH3PXD2AQ5TCZ1 1133 aa6.34□□□□□ -1.39
SKA3-207ENST00000536239 TXNRD3Q86VQ6 643 aa6.34□□□□□ -1.39
SKA3-207ENST00000536239 TNS4Q8IZW8 715 aa6.34□□□□□ -1.39
SKA3-207ENST00000536239 BRD7Q9NPI1 651 aa6.34□□□□□ -1.39
SKA3-207ENST00000536239 PSME1Q06323 249 aa6.33□□□□□ -1.4
SKA3-207ENST00000536239 CEP63Q96MT8 703 aa6.33□□□□□ -1.4
SKA3-207ENST00000536239 ANKIB1Q9P2G1 1089 aa6.33□□□□□ -1.4
SKA3-207ENST00000536239 KCNH4Q9UQ05 1017 aa6.33□□□□□ -1.4
SKA3-207ENST00000536239 SFI1A8K8P3 1242 aa6.32□□□□□ -1.4
SKA3-207ENST00000536239 SKIP12755 728 aa6.32□□□□□ -1.4
SKA3-207ENST00000536239 C1orf53Q5VUE5 145 aa6.32□□□□□ -1.4
SKA3-207ENST00000536239 SHISA2Q6UWI4 295 aa6.32□□□□□ -1.4
SKA3-207ENST00000536239 TP53INP1Q96A56 240 aa6.32□□□□□ -1.4
SKA3-207ENST00000536239 RAC1P63000 192 aa6.31□□□□□ -1.4
SKA3-207ENST00000536239 BHMTQ93088 406 aa6.31□□□□□ -1.4
SKA3-207ENST00000536239 HSH2DQ96JZ2 352 aa6.31□□□□□ -1.4
SKA3-207ENST00000536239 TYRO3Q06418 890 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 NCOA4Q13772 614 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 KRTAP19-1Q8IUB9 90 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 NFATC2IPQ8NCF5 419 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 ZNF280CQ8ND82 737 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 SSBP4Q9BWG4 385 aaPredicted RBP6.3□□□□□ -1.4
SKA3-207ENST00000536239 KRTAP9-9Q9BYP9 154 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 KRTAP9-4Q9BYQ2 154 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 UBE2OQ9C0C9 1292 aaKnown RBP6.3□□□□□ -1.4
SKA3-207ENST00000536239 JPH1Q9HDC5 661 aaPredicted RBP6.3□□□□□ -1.4
SKA3-207ENST00000536239 SLC6A14Q9UN76 642 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 HCN4Q9Y3Q4 1203 aa6.3□□□□□ -1.4
SKA3-207ENST00000536239 BTBD11A6QL63 1104 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 HIRAP54198 1017 aaPredicted RBP6.29□□□□□ -1.4
SKA3-207ENST00000536239 PSMA6P60900 246 aaKnown RBP6.29□□□□□ -1.4
SKA3-207ENST00000536239 TBC1D8BQ0IIM8 1120 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 POTEAQ6S8J7 498 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 ILDR2Q71H61 639 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 NUDT8Q8WV74 236 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 SUSD3Q96L08 255 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 PHACTR1Q9C0D0 580 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 USP21Q9UK80 565 aa6.29□□□□□ -1.4
SKA3-207ENST00000536239 AFF1P51825 1210 aaKnown RBP6.28□□□□□ -1.4
SKA3-207ENST00000536239 DMRTC2Q8IXT2 367 aaPredicted RBP6.28□□□□□ -1.4
SKA3-207ENST00000536239 FMR1NBQ8N0W7 255 aaPredicted RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms