RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 DDX10Q13206 875 aaKnown RBP15.3■□□□□ 0.04
TRAPPC4-213ENST00000533149 AKAP4Q5JQC9 854 aa15.3■□□□□ 0.04
TRAPPC4-213ENST00000533149 AEBP1Q8IUX7 1158 aa15.3■□□□□ 0.04
TRAPPC4-213ENST00000533149 MASTLQ96GX5 879 aa15.3■□□□□ 0.04
TRAPPC4-213ENST00000533149 ANKRD31Q8N7Z5 1873 aa15.3■□□□□ 0.04
TRAPPC4-213ENST00000533149 SRGNP10124 158 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 EIF5P55010 431 aaKnown RBP15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 ST5P78524 1137 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 SLC39A6Q13433 755 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 CCDC93Q567U6 631 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 PAXIP1Q6ZW49 1069 aaPredicted RBP15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 CNBD1Q8NA66 436 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 CAPNS2Q96L46 248 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 GPR101Q96P66 508 aaPredicted RBP15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 SCN11AQ9UI33 1791 aa15.29■□□□□ 0.04
TRAPPC4-213ENST00000533149 ADAMTSL1Q8N6G6 1762 aa15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 SULT6B1Q6IMI4 303 aa15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 CCDC24Q8N4L8 307 aa15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 DDX21Q9NR30 783 aaKnown RBP eCLIP15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 KIF7Q2M1P5 1343 aa15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 ZNF541Q9H0D2 1346 aa15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 COL11A2P13942 1736 aaPredicted RBP15.28■□□□□ 0.04
TRAPPC4-213ENST00000533149 CA12O43570 354 aa15.27■□□□□ 0.04
TRAPPC4-213ENST00000533149 FKBP4Q02790 459 aaKnown RBP eCLIP15.27■□□□□ 0.04
TRAPPC4-213ENST00000533149 SETDB2Q96T68 719 aa15.27■□□□□ 0.04
TRAPPC4-213ENST00000533149 SLX4Q8IY92 1834 aa15.27■□□□□ 0.03
TRAPPC4-213ENST00000533149 THSD7BQ9C0I4 1608 aa15.27■□□□□ 0.03
TRAPPC4-213ENST00000533149 MAP2K2P36507 400 aa15.26■□□□□ 0.03
TRAPPC4-213ENST00000533149 GPC2Q8N158 579 aa15.26■□□□□ 0.03
TRAPPC4-213ENST00000533149 POLR3GLQ9BT43 218 aa15.26■□□□□ 0.03
TRAPPC4-213ENST00000533149 MCOLN1Q9GZU1 580 aa15.26■□□□□ 0.03
TRAPPC4-213ENST00000533149 LGR6Q9HBX8 967 aa15.26■□□□□ 0.03
TRAPPC4-213ENST00000533149 RNF123Q5XPI4 1314 aa15.26■□□□□ 0.03
TRAPPC4-213ENST00000533149 RNMTO43148 476 aaKnown RBP15.25■□□□□ 0.03
TRAPPC4-213ENST00000533149 NPM2Q86SE8 214 aaKnown RBP15.25■□□□□ 0.03
TRAPPC4-213ENST00000533149 RTKN2Q8IZC4 609 aa15.25■□□□□ 0.03
TRAPPC4-213ENST00000533149 C7orf43Q8WVR3 580 aa15.25■□□□□ 0.03
TRAPPC4-213ENST00000533149 ZNF277Q9NRM2 450 aaPredicted RBP15.25■□□□□ 0.03
TRAPPC4-213ENST00000533149 MRC1P22897 1456 aa15.25■□□□□ 0.03
TRAPPC4-213ENST00000533149 FZD9O00144 591 aa15.24■□□□□ 0.03
TRAPPC4-213ENST00000533149 GRM1Q13255 1194 aa15.24■□□□□ 0.03
TRAPPC4-213ENST00000533149 CYP4F22Q6NT55 531 aa15.24■□□□□ 0.03
TRAPPC4-213ENST00000533149 TEX13AQ9BXU3 409 aaPredicted RBP15.24■□□□□ 0.03
TRAPPC4-213ENST00000533149 TBC1D2BQ9UPU7 963 aa15.24■□□□□ 0.03
TRAPPC4-213ENST00000533149 ARFGEF2Q9Y6D5 1785 aa15.23■□□□□ 0.03
TRAPPC4-213ENST00000533149 TTC5Q8N0Z6 440 aa15.23■□□□□ 0.03
TRAPPC4-213ENST00000533149 NPR1P16066 1061 aa15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 LMOD1P29536 600 aaPredicted RBP15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 IL6STP40189 918 aaPredicted RBP15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 IARSP41252 1262 aaKnown RBP15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 TSKSQ9UJT2 592 aa15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 ZNF330Q9Y3S2 320 aaPredicted RBP15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 TLL2Q9Y6L7 1015 aa15.22■□□□□ 0.03
TRAPPC4-213ENST00000533149 SCN7AQ01118 1682 aa15.21■□□□□ 0.03
TRAPPC4-213ENST00000533149 JDP2Q8WYK2 163 aa15.21■□□□□ 0.03
TRAPPC4-213ENST00000533149 CACNA1SQ13698 1873 aa15.21■□□□□ 0.02
TRAPPC4-213ENST00000533149 DGKZQ13574 1117 aa15.2■□□□□ 0.02
TRAPPC4-213ENST00000533149 IL13P35225 146 aa15.19■□□□□ 0.02
TRAPPC4-213ENST00000533149 EIF6P56537 245 aaKnown RBP15.19■□□□□ 0.02
TRAPPC4-213ENST00000533149 CST9Q5W186 159 aa15.19■□□□□ 0.02
TRAPPC4-213ENST00000533149 NBPF5PQ86XG9 351 aaPredicted RBP15.19■□□□□ 0.02
TRAPPC4-213ENST00000533149 SYNE4Q8N205 404 aa15.19■□□□□ 0.02
TRAPPC4-213ENST00000533149 KLRG2A4D1S0 409 aaPredicted RBP15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 AOC2O75106 756 aa15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 CAMTA2O94983 1202 aa15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 ALDH1B1P30837 517 aa15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 BRPF1P55201 1214 aaPredicted RBP15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 USP50Q70EL3 339 aaPredicted RBP15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 UBR2Q8IWV8 1755 aa15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 LTBP1Q14766 1721 aa15.18■□□□□ 0.02
TRAPPC4-213ENST00000533149 HHIPL1Q96JK4 782 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 GJA3Q9Y6H8 435 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 HEG1Q9ULI3 1381 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 FMR1Q06787 632 aaKnown RBP eCLIP15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 CLEC4GQ6UXB4 293 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 TPTE2Q6XPS3 522 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 SAPCD2Q86UD0 394 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 MORC1Q86VD1 984 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 ZNF496Q96IT1 587 aaPredicted RBP15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 PSMD1Q99460 953 aa15.17■□□□□ 0.02
TRAPPC4-213ENST00000533149 TRAF5O00463 557 aa15.16■□□□□ 0.02
TRAPPC4-213ENST00000533149 PRPF38BQ5VTL8 546 aaKnown RBP15.16■□□□□ 0.02
TRAPPC4-213ENST00000533149 ZNF790Q6PG37 636 aa15.16■□□□□ 0.02
TRAPPC4-213ENST00000533149 OLFM4Q6UX06 510 aa15.16■□□□□ 0.02
TRAPPC4-213ENST00000533149 DZIP3Q86Y13 1208 aaKnown RBP15.16■□□□□ 0.02
TRAPPC4-213ENST00000533149 ZNF652Q9Y2D9 606 aa15.16■□□□□ 0.02
TRAPPC4-213ENST00000533149 EPS15P42566 896 aa15.15■□□□□ 0.02
TRAPPC4-213ENST00000533149 SCNN1DP51172 638 aa15.15■□□□□ 0.02
TRAPPC4-213ENST00000533149 MTHFSDQ2M296 383 aaKnown RBP15.15■□□□□ 0.02
TRAPPC4-213ENST00000533149 TRPM7Q96QT4 1865 aa15.14■□□□□ 0.01
TRAPPC4-213ENST00000533149 A1BGP04217 495 aa15.14■□□□□ 0.01
TRAPPC4-213ENST00000533149 GRIPAP1Q4V328 841 aa15.14■□□□□ 0.01
TRAPPC4-213ENST00000533149 CC2D2BQ6DHV5 1058 aa15.14■□□□□ 0.01
TRAPPC4-213ENST00000533149 MIER1Q8N108 512 aa15.14■□□□□ 0.01
TRAPPC4-213ENST00000533149 CELF2O95319 508 aaKnown RBP15.13■□□□□ 0.01
TRAPPC4-213ENST00000533149 TEFQ10587 303 aa15.13■□□□□ 0.01
TRAPPC4-213ENST00000533149 FMNL2Q96PY5 1086 aa15.13■□□□□ 0.01
TRAPPC4-213ENST00000533149 PANK3Q9H999 370 aa15.13■□□□□ 0.01
TRAPPC4-213ENST00000533149 CASP8AP2Q9UKL3 1982 aa15.13■□□□□ 0.01
TRAPPC4-213ENST00000533149 PDE4DIPQ5VU43 2346 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms