RNA–Protein interactions for RNA: ENST00000532793.1

PPFIA1-223, Transcript of PTPRF interacting protein alpha 1, human

TSL 3

Gene PPFIA1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPFIA1-223	ENST00000532793	NPC1L1	Q9UHC9	1359 aa		12.94	□□□□□ -0.34
PPFIA1-223	ENST00000532793	TEF	Q10587	303 aa		12.93	□□□□□ -0.34
PPFIA1-223	ENST00000532793	SLC39A6	Q13433	755 aa		12.93	□□□□□ -0.34
PPFIA1-223	ENST00000532793	FKBP8	Q14318	412 aa		12.93	□□□□□ -0.34
PPFIA1-223	ENST00000532793	NPM2	Q86SE8	214 aa	Known RBP	12.93	□□□□□ -0.34
PPFIA1-223	ENST00000532793	GAS2L2	Q8NHY3	880 aa		12.93	□□□□□ -0.34
PPFIA1-223	ENST00000532793	COL15A1	P39059	1388 aa		12.93	□□□□□ -0.34
PPFIA1-223	ENST00000532793	AFDN	P55196	1824 aa	Known RBP	12.92	□□□□□ -0.34
PPFIA1-223	ENST00000532793	USPL1	Q5W0Q7	1092 aa		12.92	□□□□□ -0.34
PPFIA1-223	ENST00000532793	INTS5	Q6P9B9	1019 aa	Known RBP	12.92	□□□□□ -0.34
PPFIA1-223	ENST00000532793	VSIG10	Q8N0Z9	540 aa		12.92	□□□□□ -0.34
PPFIA1-223	ENST00000532793	KCP	Q6ZWJ8	1503 aa		12.92	□□□□□ -0.34
PPFIA1-223	ENST00000532793	SOS1	Q07889	1333 aa	Predicted RBP	12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	GNAT3	A8MTJ3	354 aa		12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	STARD3NL	O95772	234 aa		12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	CYP19A1	P11511	503 aa	Predicted RBP	12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	DALRD3	Q5D0E6	543 aa	Known RBP	12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	NUDC	Q9Y266	331 aa		12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	SIPA1L3	O60292	1781 aa	Predicted RBP	12.91	□□□□□ -0.34
PPFIA1-223	ENST00000532793	CANX	P27824	592 aa	Known RBP	12.9	□□□□□ -0.34
PPFIA1-223	ENST00000532793	NARF	Q9UHQ1	456 aa		12.9	□□□□□ -0.34
PPFIA1-223	ENST00000532793	COL3A1	P02461	1466 aa	Predicted RBP	12.9	□□□□□ -0.34
PPFIA1-223	ENST00000532793	DLEC1	Q9Y238	1755 aa		12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	UTRN	P46939	3433 aa		12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793		A0A087WZG4	1122 aa		12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	POLRMT	O00411	1230 aa	Known RBP	12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	DDR1	Q08345	913 aa		12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	PDCD7	Q8N8D1	485 aa	Known RBP	12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	ZBTB1	Q9Y2K1	713 aa		12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	ZNF330	Q9Y3S2	320 aa	Predicted RBP	12.89	□□□□□ -0.35
PPFIA1-223	ENST00000532793	HSPA6	P17066	643 aa		12.88	□□□□□ -0.35
PPFIA1-223	ENST00000532793	C16orf71	Q8IYS4	520 aa	Predicted RBP	12.88	□□□□□ -0.35
PPFIA1-223	ENST00000532793	NRXN2	Q9P2S2	1712 aa		12.88	□□□□□ -0.35
PPFIA1-223	ENST00000532793	SBF1	O95248	1867 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	SCN7A	Q01118	1682 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	NPHP1	O15259	732 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	NEFM	P07197	916 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	TM4SF1	P30408	202 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	CHRNA5	P30532	468 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	FMNL2	Q96PY5	1086 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	KDM2B	Q8NHM5	1336 aa		12.87	□□□□□ -0.35
PPFIA1-223	ENST00000532793	HEG1	Q9ULI3	1381 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	SERPINB2	P05120	415 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	PRKAR2B	P31323	418 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	NFIX	Q14938	502 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	C9orf131	Q5VYM1	1079 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	ZNF790	Q6PG37	636 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	BICDL1	Q6ZP65	573 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	RTF1	Q92541	710 aa	Known RBP	12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	RNF181	Q9P0P0	153 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	CCDC88A	Q3V6T2	1871 aa		12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	TNRC6C	Q9HCJ0	1690 aa	Known RBP	12.86	□□□□□ -0.35
PPFIA1-223	ENST00000532793	BTBD11	A6QL63	1104 aa		12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	KIF3C	O14782	793 aa		12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	TOMM70	O94826	608 aa		12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	U2AF1L5	P0DN76	240 aa	Predicted RBP	12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	KCNA3	P22001	575 aa		12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	CACNA1S	Q13698	1873 aa		12.85	□□□□□ -0.35
PPFIA1-223	ENST00000532793	IL17RE	Q8NFR9	667 aa		12.84	□□□□□ -0.35
PPFIA1-223	ENST00000532793	RNF166	Q96A37	237 aa	Predicted RBP	12.84	□□□□□ -0.35
PPFIA1-223	ENST00000532793	ZNF496	Q96IT1	587 aa	Predicted RBP	12.84	□□□□□ -0.35
PPFIA1-223	ENST00000532793		H0YIN7	160 aa		12.83	□□□□□ -0.36
PPFIA1-223	ENST00000532793	IL6ST	P40189	918 aa	Predicted RBP	12.83	□□□□□ -0.36
PPFIA1-223	ENST00000532793	EIF5	P55010	431 aa	Known RBP	12.83	□□□□□ -0.36
PPFIA1-223	ENST00000532793	C2CD5	Q86YS7	1000 aa		12.83	□□□□□ -0.36
PPFIA1-223	ENST00000532793	TTLL6	Q8N841	843 aa		12.83	□□□□□ -0.36
PPFIA1-223	ENST00000532793	BCOR	Q6W2J9	1755 aa		12.83	□□□□□ -0.36
PPFIA1-223	ENST00000532793	TIAM2	Q8IVF5	1701 aa		12.82	□□□□□ -0.36
PPFIA1-223	ENST00000532793	APLP1	P51693	650 aa		12.82	□□□□□ -0.36
PPFIA1-223	ENST00000532793	RSPH6A	Q9H0K4	717 aa		12.82	□□□□□ -0.36
PPFIA1-223	ENST00000532793	NMRK2	Q9NPI5	230 aa		12.82	□□□□□ -0.36
PPFIA1-223	ENST00000532793	PDZRN3	Q9UPQ7	1066 aa		12.82	□□□□□ -0.36
PPFIA1-223	ENST00000532793	CARMIL3	Q8ND23	1372 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	CEMIP	Q8WUJ3	1361 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	ANKRD31	Q8N7Z5	1873 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	PPP2R1A	P30153	589 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	PDE6B	P35913	854 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	C3orf67	Q6ZVT6	689 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	BCL2L12	Q9HB09	334 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	TBC1D2B	Q9UPU7	963 aa		12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	GOLGB1	Q14789	3259 aa	Known RBP	12.81	□□□□□ -0.36
PPFIA1-223	ENST00000532793	DLG5	Q8TDM6	1919 aa		12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	WDR90	Q96KV7	1748 aa		12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	ST5	P78524	1137 aa		12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	TBC1D9B	Q66K14	1250 aa		12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	ZNF622	Q969S3	477 aa	Known RBP eCLIP	12.8	□□□□□ -0.36	1e-6	■■□□□ 11.7
PPFIA1-223	ENST00000532793	PHACTR3	Q96KR7	559 aa		12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	SETDB2	Q96T68	719 aa		12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.8	□□□□□ -0.36
PPFIA1-223	ENST00000532793	LAMB4	A4D0S4	1761 aa		12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	A1BG	P04217	495 aa		12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	LMNB1	P20700	586 aa		12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	DZIP3	Q86Y13	1208 aa	Known RBP	12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	CNBD1	Q8NA66	436 aa		12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	RBM46	Q8TBY0	533 aa	Known RBP	12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	ZNF652	Q9Y2D9	606 aa		12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	COL11A2	P13942	1736 aa	Predicted RBP	12.79	□□□□□ -0.36
PPFIA1-223	ENST00000532793	DICER1	Q9UPY3	1922 aa	Known RBP	12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms