RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 MAP3K15Q6ZN16 1313 aa25.72■■□□□ 1.71
CPSF1-209ENST00000532725 SETDB2Q96T68 719 aa25.72■■□□□ 1.71
CPSF1-209ENST00000532725 ZNF652Q9Y2D9 606 aa25.72■■□□□ 1.71
CPSF1-209ENST00000532725 DBF4Q9UBU7 674 aaPredicted RBP25.71■■□□□ 1.71
CPSF1-209ENST00000532725 C10orf71Q711Q0 1435 aa25.71■■□□□ 1.71
CPSF1-209ENST00000532725 TGFB2P61812 414 aa25.7■■□□□ 1.7
CPSF1-209ENST00000532725 KIF6Q6ZMV9 814 aa25.7■■□□□ 1.7
CPSF1-209ENST00000532725 COPS6Q7L5N1 327 aa25.7■■□□□ 1.7
CPSF1-209ENST00000532725 SCN7AQ01118 1682 aa25.7■■□□□ 1.7
CPSF1-209ENST00000532725 FANCIQ9NVI1 1328 aa25.69■■□□□ 1.7
CPSF1-209ENST00000532725 XAGE3Q8WTP9 111 aa25.69■■□□□ 1.7
CPSF1-209ENST00000532725 ZBTB3Q9H5J0 574 aa25.68■■□□□ 1.7
CPSF1-209ENST00000532725 DCAF8L1A6NGE4 600 aa25.67■■□□□ 1.7
CPSF1-209ENST00000532725 GOLGA2Q08379 1002 aa25.67■■□□□ 1.7
CPSF1-209ENST00000532725 AIMP1Q12904 312 aaKnown RBP25.67■■□□□ 1.7
CPSF1-209ENST00000532725 CHMP4AQ9BY43 222 aa25.67■■□□□ 1.7
CPSF1-209ENST00000532725 HYPKQ9NX55 129 aa25.67■■□□□ 1.7
CPSF1-209ENST00000532725 CARMIL3Q8ND23 1372 aa25.67■■□□□ 1.7
CPSF1-209ENST00000532725 BCORQ6W2J9 1755 aa25.67■■□□□ 1.7
CPSF1-209ENST00000532725 A0A0G2JLW4 131 aa25.66■■□□□ 1.7
CPSF1-209ENST00000532725 TWISTNBQ3B726 338 aaPredicted RBP25.66■■□□□ 1.7
CPSF1-209ENST00000532725 GIGYF2Q6Y7W6 1299 aaKnown RBP25.66■■□□□ 1.7
CPSF1-209ENST00000532725 NIP7Q9Y221 180 aaKnown RBP eCLIP25.66■■□□□ 1.7
CPSF1-209ENST00000532725 KIF13BQ9NQT8 1826 aa25.65■■□□□ 1.7
CPSF1-209ENST00000532725 DPEP1P16444 411 aa25.65■■□□□ 1.7
CPSF1-209ENST00000532725 CCDC30Q5VVM6 783 aa25.65■■□□□ 1.7
CPSF1-209ENST00000532725 MYH16Q9H6N6 1097 aa25.65■■□□□ 1.7
CPSF1-209ENST00000532725 NRXN2Q9P2S2 1712 aa25.64■■□□□ 1.7
CPSF1-209ENST00000532725 KCNA3P22001 575 aa25.64■■□□□ 1.7
CPSF1-209ENST00000532725 EXOSC9Q06265 439 aaKnown RBP25.64■■□□□ 1.7
CPSF1-209ENST00000532725 GPR162Q16538 588 aa25.64■■□□□ 1.7
CPSF1-209ENST00000532725 PRR5LQ6MZQ0 368 aa25.64■■□□□ 1.7
CPSF1-209ENST00000532725 AFDNP55196 1824 aaKnown RBP25.63■■□□□ 1.69
CPSF1-209ENST00000532725 VAMP4O75379 141 aa25.63■■□□□ 1.69
CPSF1-209ENST00000532725 ZNF34Q8IZ26 560 aa25.63■■□□□ 1.69
CPSF1-209ENST00000532725 PXDNLA1KZ92 1463 aa25.63■■□□□ 1.69
CPSF1-209ENST00000532725 YBX3P16989 372 aaKnown RBP eCLIP25.61■■□□□ 1.69
CPSF1-209ENST00000532725 TPTE2Q6XPS3 522 aa25.61■■□□□ 1.69
CPSF1-209ENST00000532725 ANKRD13DQ6ZTN6 518 aa25.61■■□□□ 1.69
CPSF1-209ENST00000532725 NBPF5PQ86XG9 351 aaPredicted RBP25.61■■□□□ 1.69
CPSF1-209ENST00000532725 CCDC24Q8N4L8 307 aa25.61■■□□□ 1.69
CPSF1-209ENST00000532725 PHAXQ9H814 394 aaKnown RBP25.61■■□□□ 1.69
CPSF1-209ENST00000532725 ATP10DQ9P241 1426 aa25.61■■□□□ 1.69
CPSF1-209ENST00000532725 PELP1Q8IZL8 1130 aaKnown RBP25.6■■□□□ 1.69
CPSF1-209ENST00000532725 CNBD1Q8NA66 436 aa25.6■■□□□ 1.69
CPSF1-209ENST00000532725 PLBD2Q8NHP8 589 aa25.6■■□□□ 1.69
CPSF1-209ENST00000532725 BRIP1Q9BX63 1249 aa25.6■■□□□ 1.69
CPSF1-209ENST00000532725 GOLGB1Q14789 3259 aaKnown RBP25.6■■□□□ 1.69
CPSF1-209ENST00000532725 NUP98P52948 1817 aa25.59■■□□□ 1.69
CPSF1-209ENST00000532725 GPTP24298 496 aa25.59■■□□□ 1.69
CPSF1-209ENST00000532725 CHRNA5P30532 468 aa25.59■■□□□ 1.69
CPSF1-209ENST00000532725 E9PSI1 815 aa25.58■■□□□ 1.69
CPSF1-209ENST00000532725 TCERG1O14776 1098 aaKnown RBP25.58■■□□□ 1.69
CPSF1-209ENST00000532725 SLFN5Q08AF3 891 aa25.58■■□□□ 1.69
CPSF1-209ENST00000532725 TCIRG1Q13488 830 aa25.58■■□□□ 1.69
CPSF1-209ENST00000532725 WWC3Q9ULE0 1092 aa25.58■■□□□ 1.69
CPSF1-209ENST00000532725 UBN2Q6ZU65 1347 aa25.58■■□□□ 1.69
CPSF1-209ENST00000532725 KIAA1551Q9HCM1 1747 aa25.57■■□□□ 1.68
CPSF1-209ENST00000532725 UTRNP46939 3433 aa25.57■■□□□ 1.68
CPSF1-209ENST00000532725 FAM177BA6PVY3 158 aa25.57■■□□□ 1.68
CPSF1-209ENST00000532725 SUSD4Q5VX71 490 aa25.57■■□□□ 1.68
CPSF1-209ENST00000532725 CDCA7LQ96GN5 454 aa25.57■■□□□ 1.68
CPSF1-209ENST00000532725 ST5P78524 1137 aa25.56■■□□□ 1.68
CPSF1-209ENST00000532725 HSP90AB3PQ58FF7 597 aa25.56■■□□□ 1.68
CPSF1-209ENST00000532725 STK31Q9BXU1 1019 aa25.56■■□□□ 1.68
CPSF1-209ENST00000532725 PIM2Q9P1W9 311 aa25.56■■□□□ 1.68
CPSF1-209ENST00000532725 N4BP2Q86UW6 1770 aaPredicted RBP25.55■■□□□ 1.68
CPSF1-209ENST00000532725 NPHP1O15259 732 aa25.55■■□□□ 1.68
CPSF1-209ENST00000532725 GRIN3BO60391 1043 aa25.55■■□□□ 1.68
CPSF1-209ENST00000532725 SLC4A2P04920 1241 aa25.55■■□□□ 1.68
CPSF1-209ENST00000532725 PDE6BP35913 854 aa25.55■■□□□ 1.68
CPSF1-209ENST00000532725 TRMT2AQ8IZ69 625 aaKnown RBP25.55■■□□□ 1.68
CPSF1-209ENST00000532725 PARP10Q53GL7 1025 aa25.54■■□□□ 1.68
CPSF1-209ENST00000532725 C2CD5Q86YS7 1000 aa25.54■■□□□ 1.68
CPSF1-209ENST00000532725 NYXQ9GZU5 481 aa25.54■■□□□ 1.68
CPSF1-209ENST00000532725 PDZRN3Q9UPQ7 1066 aa25.54■■□□□ 1.68
CPSF1-209ENST00000532725 H0YIN7 160 aa25.53■■□□□ 1.68
CPSF1-209ENST00000532725 KLRG2A4D1S0 409 aaPredicted RBP25.52■■□□□ 1.68
CPSF1-209ENST00000532725 G2E3Q7L622 706 aa25.52■■□□□ 1.68
CPSF1-209ENST00000532725 PPP1R42Q7Z4L9 355 aa25.52■■□□□ 1.68
CPSF1-209ENST00000532725 RIC3Q7Z5B4 369 aa25.52■■□□□ 1.68
CPSF1-209ENST00000532725 NLRP10Q86W26 655 aa25.52■■□□□ 1.68
CPSF1-209ENST00000532725 BCS1LQ9Y276 419 aa25.52■■□□□ 1.68
CPSF1-209ENST00000532725 NTSR2O95665 410 aa25.51■■□□□ 1.67
CPSF1-209ENST00000532725 GTF2E1P29083 439 aaPredicted RBP25.51■■□□□ 1.67
CPSF1-209ENST00000532725 ERFEQ4G0M1 354 aa25.51■■□□□ 1.67
CPSF1-209ENST00000532725 NUTM1Q86Y26 1132 aa25.51■■□□□ 1.67
CPSF1-209ENST00000532725 ISCA1Q9BUE6 129 aa25.51■■□□□ 1.67
CPSF1-209ENST00000532725 DALRD3Q5D0E6 543 aaKnown RBP25.5■■□□□ 1.67
CPSF1-209ENST00000532725 UTP14AQ9BVJ6 771 aaKnown RBP25.5■■□□□ 1.67
CPSF1-209ENST00000532725 IBTKQ9P2D0 1353 aaPredicted RBP25.5■■□□□ 1.67
CPSF1-209ENST00000532725 ANKRD31Q8N7Z5 1873 aa25.49■■□□□ 1.67
CPSF1-209ENST00000532725 DDX58O95786 925 aaKnown RBP25.49■■□□□ 1.67
CPSF1-209ENST00000532725 TRIM28Q13263 835 aaKnown RBP25.49■■□□□ 1.67
CPSF1-209ENST00000532725 ATP5J2-PTCD1G3V325 749 aa25.48■■□□□ 1.67
CPSF1-209ENST00000532725 SRGNP10124 158 aa25.48■■□□□ 1.67
CPSF1-209ENST00000532725 SLC10A5Q5PT55 438 aa25.48■■□□□ 1.67
CPSF1-209ENST00000532725 KSR2Q6VAB6 950 aa25.48■■□□□ 1.67
CPSF1-209ENST00000532725 PI4KAP2A4QPH2 592 aa25.47■■□□□ 1.67
CPSF1-209ENST00000532725 TTLL6Q8N841 843 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms