RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RHPN1Q8TCX5 695 aa7.94□□□□□ -1.14
CD44-235ENST00000532339 NACADO15069 1562 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 BICRAQ9NZM4 1560 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 SHISA8B8ZZ34 492 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 KANK4Q5T7N3 995 aaPredicted RBP7.93□□□□□ -1.14
CD44-235ENST00000532339 SH3PXD2AQ5TCZ1 1133 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 POTEAQ6S8J7 498 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 LRRC69Q6ZNQ3 347 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 AVENQ9NQS1 362 aaPredicted RBP7.93□□□□□ -1.14
CD44-235ENST00000532339 MARK1Q9P0L2 795 aa7.93□□□□□ -1.14
CD44-235ENST00000532339 EFSO43281 561 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 PPP1R12BO60237 982 aaPredicted RBP7.92□□□□□ -1.14
CD44-235ENST00000532339 AMPD1P23109 780 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 ADH6P28332 368 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 LMOD1P29536 600 aaPredicted RBP7.92□□□□□ -1.14
CD44-235ENST00000532339 PTK7Q13308 1070 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 GAS2L2Q8NHY3 880 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 C7orf43Q8WVR3 580 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 VRTNQ9H8Y1 702 aa7.92□□□□□ -1.14
CD44-235ENST00000532339 FAM196BA6NMK8 535 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 NEURL1BA8MQ27 555 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 EPXP11678 715 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 CRTC2Q53ET0 693 aaPredicted RBP7.91□□□□□ -1.14
CD44-235ENST00000532339 STAG2Q8N3U4 1231 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 PHACTR1Q9C0D0 580 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 RRAGCQ9HB90 399 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 ANKIB1Q9P2G1 1089 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 HCN2Q9UL51 889 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 ZNF777Q9ULD5 760 aaPredicted RBP7.91□□□□□ -1.14
CD44-235ENST00000532339 MKL2Q9ULH7 1088 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 PRR12Q9ULL5 1215 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 HCN4Q9Y3Q4 1203 aa7.91□□□□□ -1.14
CD44-235ENST00000532339 ATAD2Q6PL18 1390 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L15C9J2P7 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L10C9JJH3 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L13C9JLJ4 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L12C9JPN9 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L11C9JVI0 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L21D6R901 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L18D6R9N7 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L22D6RA61 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L17D6RBQ6 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L19D6RCP7 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L20D6RJB6 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 C21orf2O43822 256 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 USP17L24Q0WX57 530 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 DPYDQ12882 1025 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 ZNF468Q5VIY5 522 aaPredicted RBP7.9□□□□□ -1.14
CD44-235ENST00000532339 SCG3Q8WXD2 468 aaKnown RBP7.9□□□□□ -1.14
CD44-235ENST00000532339 STRN4Q9NRL3 753 aa7.9□□□□□ -1.14
CD44-235ENST00000532339 SNRPNP63162 240 aaKnown RBP7.89□□□□□ -1.15
CD44-235ENST00000532339 ANKMY2Q8IV38 441 aa7.89□□□□□ -1.15
CD44-235ENST00000532339 HINFPQ9BQA5 517 aa7.89□□□□□ -1.15
CD44-235ENST00000532339 PIK3R2O00459 728 aa7.88□□□□□ -1.15
CD44-235ENST00000532339 CFAP70Q5T0N1 1121 aa7.88□□□□□ -1.15
CD44-235ENST00000532339 BTBD6Q96KE9 485 aa7.88□□□□□ -1.15
CD44-235ENST00000532339 C2orf49Q9BVC5 232 aaPredicted RBP7.88□□□□□ -1.15
CD44-235ENST00000532339 UNC13AQ9UPW8 1703 aa7.88□□□□□ -1.15
CD44-235ENST00000532339 IGHA1P01876 353 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 HIF1AQ16665 826 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 FCHSD1Q86WN1 690 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 ALDH16A1Q8IZ83 802 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 CHMP7Q8WUX9 453 aaPredicted RBP7.87□□□□□ -1.15
CD44-235ENST00000532339 DCAF5Q96JK2 942 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 SUSD3Q96L08 255 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 KLF15Q9UIH9 416 aa7.87□□□□□ -1.15
CD44-235ENST00000532339 PCBP4P57723 403 aaKnown RBP7.86□□□□□ -1.15
CD44-235ENST00000532339 GPAT2Q6NUI2 795 aa7.86□□□□□ -1.15
CD44-235ENST00000532339 HSH2DQ96JZ2 352 aa7.86□□□□□ -1.15
CD44-235ENST00000532339 CEP63Q96MT8 703 aa7.86□□□□□ -1.15
CD44-235ENST00000532339 BRD7Q9NPI1 651 aa7.86□□□□□ -1.15
CD44-235ENST00000532339 IGFBP4P22692 258 aa7.85□□□□□ -1.15
CD44-235ENST00000532339 SFSWAPQ12872 951 aaKnown RBP7.85□□□□□ -1.15
CD44-235ENST00000532339 CHSY3Q70JA7 882 aa7.85□□□□□ -1.15
CD44-235ENST00000532339 SYT9Q86SS6 491 aa7.85□□□□□ -1.15
CD44-235ENST00000532339 ALYREFQ86V81 257 aaKnown RBP7.85□□□□□ -1.15
CD44-235ENST00000532339 NGLY1Q96IV0 654 aa7.85□□□□□ -1.15
CD44-235ENST00000532339 GNB5O14775 395 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 HOXB4P17483 251 aaPredicted RBP7.84□□□□□ -1.15
CD44-235ENST00000532339 DGKGP49619 791 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 KCNQ4P56696 695 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 NEUROD1Q13562 356 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 LINC00114Q6XXX2 140 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 ZNF280CQ8ND82 737 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 ARXQ96QS3 562 aa7.84□□□□□ -1.15
CD44-235ENST00000532339 SHROOM4Q9ULL8 1493 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 ELOA3CA0A087WX78 387 aaPredicted RBP7.83□□□□□ -1.16
CD44-235ENST00000532339 ELOA3DA6NLF2 546 aaPredicted RBP7.83□□□□□ -1.16
CD44-235ENST00000532339 SIN3BO75182 1162 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 ALAS2P22557 587 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 RFX1P22670 979 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 TYRO3Q06418 890 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 RTN1Q16799 776 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 ELOA3BQ3SY89 546 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 ELOA3Q8NG57 546 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 FAM200AQ8TCP9 573 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 KCNH4Q9UQ05 1017 aa7.83□□□□□ -1.16
CD44-235ENST00000532339 EIF4G1Q04637 1599 aaKnown RBP7.83□□□□□ -1.16
CD44-235ENST00000532339 LGR5O75473 907 aa7.82□□□□□ -1.16
CD44-235ENST00000532339 SPEM2Q0P670 501 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms