RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 PHF14O94880 888 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 ZSCAN22P10073 491 aaPredicted RBP23.43■■□□□ 1.34
PCF11-203ENST00000530304 CPA1P15085 419 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 CASTP20810 708 aaKnown RBP23.43■■□□□ 1.34
PCF11-203ENST00000530304 TMEM87AQ8NBN3 555 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 ECHDC1Q9NTX5 307 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 ZKSCAN5Q9Y2L8 839 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 PROSER3Q2NL68 480 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 AMOTQ4VCS5 1084 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 RUFY2Q8WXA3 655 aa23.43■■□□□ 1.34
PCF11-203ENST00000530304 GIGYF1O75420 1035 aaPredicted RBP23.42■■□□□ 1.34
PCF11-203ENST00000530304 ALDH1L1O75891 902 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 SYT1P21579 422 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 PA2G4Q9UQ80 394 aaKnown RBP23.42■■□□□ 1.34
PCF11-203ENST00000530304 CNPY2Q9Y2B0 182 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 STX6O43752 255 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 PTH1RQ03431 593 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 C1orf141Q5JVX7 400 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 KSR2Q6VAB6 950 aa23.42■■□□□ 1.34
PCF11-203ENST00000530304 HSP90AA2PQ14568 343 aaPredicted RBP23.41■■□□□ 1.34
PCF11-203ENST00000530304 HYPKQ9NX55 129 aa23.41■■□□□ 1.34
PCF11-203ENST00000530304 CCDC39Q9UFE4 941 aa23.41■■□□□ 1.34
PCF11-203ENST00000530304 ADGRL3Q9HAR2 1447 aa23.41■■□□□ 1.34
PCF11-203ENST00000530304 CWF19L2Q2TBE0 894 aaKnown RBP23.41■■□□□ 1.34
PCF11-203ENST00000530304 SMC3Q9UQE7 1217 aa23.41■■□□□ 1.34
PCF11-203ENST00000530304 RRP9O43818 475 aaKnown RBP23.4■■□□□ 1.34
PCF11-203ENST00000530304 IFIT2P09913 472 aaKnown RBP23.4■■□□□ 1.34
PCF11-203ENST00000530304 ERC1Q8IUD2 1116 aa23.4■■□□□ 1.34
PCF11-203ENST00000530304 GPATCH3Q96I76 525 aa23.4■■□□□ 1.34
PCF11-203ENST00000530304 PRAMEF22A3QJZ6 481 aa23.39■■□□□ 1.34
PCF11-203ENST00000530304 LARGE1O95461 756 aa23.39■■□□□ 1.34
PCF11-203ENST00000530304 ADCK5Q3MIX3 580 aa23.39■■□□□ 1.34
PCF11-203ENST00000530304 PXDNQ92626 1479 aa23.39■■□□□ 1.33
PCF11-203ENST00000530304 MCM5P33992 734 aa23.39■■□□□ 1.33
PCF11-203ENST00000530304 XPCQ01831 940 aaPredicted RBP23.39■■□□□ 1.33
PCF11-203ENST00000530304 PRPF40BQ6NWY9 871 aaKnown RBP23.39■■□□□ 1.33
PCF11-203ENST00000530304 CHD2O14647 1828 aaKnown RBP23.39■■□□□ 1.33
PCF11-203ENST00000530304 JAKMIP1Q96N16 626 aaKnown RBP23.38■■□□□ 1.33
PCF11-203ENST00000530304 F13A1P00488 732 aa23.38■■□□□ 1.33
PCF11-203ENST00000530304 VPS53Q5VIR6 699 aa23.38■■□□□ 1.33
PCF11-203ENST00000530304 HDAC5Q9UQL6 1122 aa23.38■■□□□ 1.33
PCF11-203ENST00000530304 PHRF1Q9P1Y6 1649 aaKnown RBP23.38■■□□□ 1.33
PCF11-203ENST00000530304 HEG1Q9ULI3 1381 aa23.38■■□□□ 1.33
PCF11-203ENST00000530304 GCP02774 474 aa23.37■■□□□ 1.33
PCF11-203ENST00000530304 AACSQ86V21 672 aa23.37■■□□□ 1.33
PCF11-203ENST00000530304 EVI5LQ96CN4 794 aa23.37■■□□□ 1.33
PCF11-203ENST00000530304 PDRG1Q9NUG6 133 aa23.37■■□□□ 1.33
PCF11-203ENST00000530304 CCDC183Q5T5S1 534 aa23.37■■□□□ 1.33
PCF11-203ENST00000530304 NCAPD2Q15021 1401 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 ARHGEF25Q86VW2 580 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 CCDC83Q8IWF9 413 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 KCNB2Q92953 911 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 ZSWIM6Q9HCJ5 1215 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 UBE2HP62256 183 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 TM6SF1Q9BZW5 370 aa23.36■■□□□ 1.33
PCF11-203ENST00000530304 NECTIN1Q15223 517 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 ATP6V1DQ9Y5K8 247 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 CYP46A1Q9Y6A2 500 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 GJB2P29033 226 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 TERF1P54274 439 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 TPRNQ4KMQ1 711 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 KAZALD1Q96I82 304 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 SUCLG2Q96I99 432 aa23.35■■□□□ 1.33
PCF11-203ENST00000530304 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.35■■□□□ 1.33
PCF11-203ENST00000530304 GRM8O00222 908 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 ANKLE2Q86XL3 938 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 FAM184AQ8NB25 1140 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 LINS1Q8NG48 757 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 SASH1O94885 1247 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 ANKRD24Q8TF21 1146 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 R3HCC1Q9Y3T6 440 aaKnown RBP23.34■■□□□ 1.33
PCF11-203ENST00000530304 OVOS2A0A0G2JMS6 1433 aa23.34■■□□□ 1.33
PCF11-203ENST00000530304 DTNBO60941 627 aa23.33■■□□□ 1.33
PCF11-203ENST00000530304 ZSCAN31Q96LW9 406 aaPredicted RBP23.33■■□□□ 1.33
PCF11-203ENST00000530304 CCDC171Q6TFL3 1326 aa23.33■■□□□ 1.33
PCF11-203ENST00000530304 FIBPO43427 364 aa23.33■■□□□ 1.33
PCF11-203ENST00000530304 BICC1Q9H694 974 aaKnown RBP23.33■■□□□ 1.33
PCF11-203ENST00000530304 SH2B1Q9NRF2 756 aaPredicted RBP23.33■■□□□ 1.33
PCF11-203ENST00000530304 LETM1O95202 739 aaPredicted RBP23.32■■□□□ 1.32
PCF11-203ENST00000530304 AIMP1Q12904 312 aaKnown RBP23.32■■□□□ 1.32
PCF11-203ENST00000530304 EAF2Q96CJ1 260 aaPredicted RBP23.32■■□□□ 1.32
PCF11-203ENST00000530304 PTMAP06454 111 aaKnown RBP23.32■■□□□ 1.32
PCF11-203ENST00000530304 ZKSCAN1P17029 563 aaPredicted RBP23.32■■□□□ 1.32
PCF11-203ENST00000530304 G3BP1Q13283 466 aaKnown RBP eCLIP23.32■■□□□ 1.32
PCF11-203ENST00000530304 UVSSAQ2YD98 709 aa23.32■■□□□ 1.32
PCF11-203ENST00000530304 FAM227BQ96M60 508 aa23.32■■□□□ 1.32
PCF11-203ENST00000530304 UTYO14607 1347 aa23.32■■□□□ 1.32
PCF11-203ENST00000530304 DDX54Q8TDD1 881 aaKnown RBP23.31■■□□□ 1.32
PCF11-203ENST00000530304 CCDC8Q9H0W5 538 aaPredicted RBP23.31■■□□□ 1.32
PCF11-203ENST00000530304 MTMR6Q9Y217 621 aa23.31■■□□□ 1.32
PCF11-203ENST00000530304 RBM8AQ9Y5S9 174 aaKnown RBP23.31■■□□□ 1.32
PCF11-203ENST00000530304 ME3Q16798 604 aa23.31■■□□□ 1.32
PCF11-203ENST00000530304 ORAI2Q96SN7 254 aa23.31■■□□□ 1.32
PCF11-203ENST00000530304 DDX58O95786 925 aaKnown RBP23.3■■□□□ 1.32
PCF11-203ENST00000530304 ST3GAL1Q11201 340 aa23.3■■□□□ 1.32
PCF11-203ENST00000530304 CSPP1Q1MSJ5 1256 aa23.3■■□□□ 1.32
PCF11-203ENST00000530304 CREB3L3Q68CJ9 461 aa23.3■■□□□ 1.32
PCF11-203ENST00000530304 DDX21Q9NR30 783 aaKnown RBP eCLIP23.3■■□□□ 1.32
PCF11-203ENST00000530304 NMIQ13287 307 aaPredicted RBP23.3■■□□□ 1.32
PCF11-203ENST00000530304 MAP4K1Q92918 833 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms