RNA–Protein interactions for RNA: ENST00000528865.5

CSTF3-208, Transcript of cleavage stimulation factor subunit 3, human

TSL 5

Gene CSTF3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSTF3-208	ENST00000528865	MST1R	Q04912	1400 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	LETM1	O95202	739 aa	Predicted RBP	10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	GC	P02774	474 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	ZSCAN22	P10073	491 aa	Predicted RBP	10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	PDIA4	P13667	645 aa	Known RBP	10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	AK2	P54819	239 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	MPRIP	Q6WCQ1	1025 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	RUFY3	Q7L099	469 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	LINS1	Q8NG48	757 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	TSPY26P	Q9H489	355 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	MAP3K2	Q9Y2U5	619 aa		10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.09	□□□□□ -0.79
CSTF3-208	ENST00000528865	HIP1	O00291	1037 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	GADD45B	O75293	160 aa	Predicted RBP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	PHF14	O94880	888 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	MAP4K4	O95819	1239 aa	Predicted RBP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	PDIA6	Q15084	440 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	NECTIN1	Q15223	517 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	C1orf141	Q5JVX7	400 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	C14orf37	Q86TY3	774 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	FAM184A	Q8NB25	1140 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	LRRC59	Q96AG4	307 aa	Known RBP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	GPATCH3	Q96I76	525 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	KAZALD1	Q96I82	304 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	DDX21	Q9NR30	783 aa	Known RBP eCLIP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	SH2B1	Q9NRF2	756 aa	Predicted RBP	10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	CCDC39	Q9UFE4	941 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	ZKSCAN5	Q9Y2L8	839 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	ADAMTS7	Q9UKP4	1686 aa		10.08	□□□□□ -0.8
CSTF3-208	ENST00000528865	CAMTA1	Q9Y6Y1	1673 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	STX6	O43752	255 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	ANXA1	P04083	346 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	SYT1	P21579	422 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	MSN	P26038	577 aa	Known RBP	10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	PTH1R	Q03431	593 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	PROSER3	Q2NL68	480 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	ESCO1	Q5FWF5	840 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	CCDC183	Q5T5S1	534 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	CWC27	Q6UX04	472 aa	Known RBP	10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	ANKRD24	Q8TF21	1146 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	MAP4K1	Q92918	833 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	DIAPH3	Q9NSV4	1193 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	PDRG1	Q9NUG6	133 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	ATP6V1D	Q9Y5K8	247 aa		10.07	□□□□□ -0.8
CSTF3-208	ENST00000528865	GRM8	O00222	908 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	SASH1	O94885	1247 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	DDX58	O95786	925 aa	Known RBP	10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	F13A1	P00488	732 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	IFIT2	P09913	472 aa	Known RBP	10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	UBE2H	P62256	183 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	OS9	Q13438	667 aa	Predicted RBP	10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	TSGA10IP	Q3SY00	556 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	NOL8	Q76FK4	1167 aa	Known RBP	10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	SUCLG2	Q96I99	432 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	SMC3	Q9UQE7	1217 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	MTMR6	Q9Y217	621 aa		10.06	□□□□□ -0.8
CSTF3-208	ENST00000528865	PXDN	Q92626	1479 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	COL15A1	P39059	1388 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	PLEKHG2	Q9H7P9	1386 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	RRP9	O43818	475 aa	Known RBP	10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	CSPP1	Q1MSJ5	1256 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	LARP1	Q6PKG0	1096 aa	Known RBP	10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	EAF2	Q96CJ1	260 aa	Predicted RBP	10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	SPG7	Q9UQ90	795 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	CYP46A1	Q9Y6A2	500 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	CCDC171	Q6TFL3	1326 aa		10.05	□□□□□ -0.8
CSTF3-208	ENST00000528865	JCAD	Q9P266	1359 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	SIPA1L3	O60292	1781 aa	Predicted RBP	10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	CAST	P20810	708 aa	Known RBP	10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	PSMA5	P28066	241 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	ST3GAL1	Q11201	340 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	CREB3L3	Q68CJ9	461 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	PRPF40B	Q6NWY9	871 aa	Known RBP	10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	AACS	Q86V21	672 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	FUCA2	Q9BTY2	467 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.04	□□□□□ -0.8	6e-6	■□□□□ 8.9
CSTF3-208	ENST00000528865	PA2G4	Q9UQ80	394 aa	Known RBP	10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	CNPY2	Q9Y2B0	182 aa		10.04	□□□□□ -0.8
CSTF3-208	ENST00000528865	RGPD2	P0DJD1	1756 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	LARGE1	O95461	756 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	IGKV5-2	P06315	115 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	ZKSCAN1	P17029	563 aa	Predicted RBP	10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	CWF19L2	Q2TBE0	894 aa	Known RBP	10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	ADCK5	Q3MIX3	580 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	UBE2Q2	Q8WVN8	375 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	JAKMIP1	Q96N16	626 aa	Known RBP	10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	ORAI2	Q96SN7	254 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	METTL22	Q9BUU2	404 aa	Predicted RBP	10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	BICC1	Q9H694	974 aa	Known RBP	10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	GDPD2	Q9HCC8	539 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	COPRS	Q9NQ92	184 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	AXIN2	Q9Y2T1	843 aa		10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	RBM8A	Q9Y5S9	174 aa	Known RBP	10.03	□□□□□ -0.8
CSTF3-208	ENST00000528865	MRC1	P22897	1456 aa		10.03	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms