RNA–Protein interactions for RNA: ENST00000526877.1

SSSCA1-203, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-203ENST00000526877 NBPF26B4DH59 902 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 CAMTA2O94983 1202 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 CT47B1P0C2W7 299 aaPredicted RBP16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 CHRNA5P30532 468 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 PIP4K2AP48426 406 aaPredicted RBP16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 TBC1D9BQ66K14 1250 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 NBPF10Q6P3W6 841 aaKnown RBP16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 NBPF15Q8N660 670 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 MBIPQ9NS73 344 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 ADCY9O60503 1353 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 ARFGEF1Q9Y6D6 1849 aa16.33■□□□□ 0.2
SSSCA1-203ENST00000526877 SCN7AQ01118 1682 aa16.32■□□□□ 0.2
SSSCA1-203ENST00000526877 EXOSC9Q06265 439 aaKnown RBP16.32■□□□□ 0.2
SSSCA1-203ENST00000526877 PIM2Q9P1W9 311 aa16.32■□□□□ 0.2
SSSCA1-203ENST00000526877 TSPYL4Q9UJ04 414 aa16.32■□□□□ 0.2
SSSCA1-203ENST00000526877 ZNF330Q9Y3S2 320 aaPredicted RBP16.32■□□□□ 0.2
SSSCA1-203ENST00000526877 SUPT16HQ9Y5B9 1047 aaKnown RBP16.32■□□□□ 0.2
SSSCA1-203ENST00000526877 EIF4A1P60842 406 aaKnown RBP16.31■□□□□ 0.2
SSSCA1-203ENST00000526877 BICDL1Q6ZP65 573 aa16.31■□□□□ 0.2
SSSCA1-203ENST00000526877 ATP10DQ9P241 1426 aa16.3■□□□□ 0.2
SSSCA1-203ENST00000526877 GIGYF1O75420 1035 aaPredicted RBP16.3■□□□□ 0.2
SSSCA1-203ENST00000526877 DZIP3Q86Y13 1208 aaKnown RBP16.3■□□□□ 0.2
SSSCA1-203ENST00000526877 CARMIL3Q8ND23 1372 aa16.29■□□□□ 0.2
SSSCA1-203ENST00000526877 BCORQ6W2J9 1755 aa16.29■□□□□ 0.2
SSSCA1-203ENST00000526877 DALRD3Q5D0E6 543 aaKnown RBP16.28■□□□□ 0.2
SSSCA1-203ENST00000526877 ARHGAP27Q6ZUM4 889 aa16.28■□□□□ 0.2
SSSCA1-203ENST00000526877 ANKRD31Q8N7Z5 1873 aa16.28■□□□□ 0.2
SSSCA1-203ENST00000526877 LAMB4A4D0S4 1761 aa16.28■□□□□ 0.2
SSSCA1-203ENST00000526877 DLEC1Q9Y238 1755 aa16.28■□□□□ 0.2
SSSCA1-203ENST00000526877 NEFLP07196 543 aa16.27■□□□□ 0.2
SSSCA1-203ENST00000526877 PRR5LQ6MZQ0 368 aa16.27■□□□□ 0.2
SSSCA1-203ENST00000526877 CLEC4GQ6UXB4 293 aa16.27■□□□□ 0.2
SSSCA1-203ENST00000526877 NPM2Q86SE8 214 aaKnown RBP16.27■□□□□ 0.2
SSSCA1-203ENST00000526877 ZNF428Q96B54 188 aa16.27■□□□□ 0.2
SSSCA1-203ENST00000526877 RGL2O15211 777 aa16.26■□□□□ 0.19
SSSCA1-203ENST00000526877 SETDB2Q96T68 719 aa16.26■□□□□ 0.19
SSSCA1-203ENST00000526877 BRIP1Q9BX63 1249 aa16.26■□□□□ 0.19
SSSCA1-203ENST00000526877 C1QTNF8P60827 252 aa16.25■□□□□ 0.19
SSSCA1-203ENST00000526877 TWISTNBQ3B726 338 aaPredicted RBP16.25■□□□□ 0.19
SSSCA1-203ENST00000526877 CCDC24Q8N4L8 307 aa16.25■□□□□ 0.19
SSSCA1-203ENST00000526877 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.25■□□□□ 0.19
SSSCA1-203ENST00000526877 SBF1O95248 1867 aa16.25■□□□□ 0.19
SSSCA1-203ENST00000526877 RARSP54136 660 aaKnown RBP16.24■□□□□ 0.19
SSSCA1-203ENST00000526877 C2CD5Q86YS7 1000 aa16.24■□□□□ 0.19
SSSCA1-203ENST00000526877 C8orf58Q8NAV2 365 aa16.24■□□□□ 0.19
SSSCA1-203ENST00000526877 RNF123Q5XPI4 1314 aa16.23■□□□□ 0.19
SSSCA1-203ENST00000526877 H0YIN7 160 aa16.23■□□□□ 0.19
SSSCA1-203ENST00000526877 ELL2O00472 640 aaPredicted RBP16.23■□□□□ 0.19
SSSCA1-203ENST00000526877 VAMP4O75379 141 aa16.23■□□□□ 0.19
SSSCA1-203ENST00000526877 HLFQ16534 295 aa16.23■□□□□ 0.19
SSSCA1-203ENST00000526877 TTLL6Q8N841 843 aa16.23■□□□□ 0.19
SSSCA1-203ENST00000526877 PDE6BP35913 854 aa16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 RRP1P56182 461 aaKnown RBP16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 ALDH1L2Q3SY69 923 aa16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 TSPYL6Q8N831 410 aa16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 CHMP4AQ9BY43 222 aa16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 GPBP1L1Q9HC44 474 aaPredicted RBP16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 NUP98P52948 1817 aa16.22■□□□□ 0.19
SSSCA1-203ENST00000526877 LRP10Q7Z4F1 713 aa16.21■□□□□ 0.19
SSSCA1-203ENST00000526877 CNBD1Q8NA66 436 aa16.21■□□□□ 0.19
SSSCA1-203ENST00000526877 ZNF526Q8TF50 670 aaPredicted RBP16.21■□□□□ 0.19
SSSCA1-203ENST00000526877 PDZRN3Q9UPQ7 1066 aa16.21■□□□□ 0.19
SSSCA1-203ENST00000526877 ZNF652Q9Y2D9 606 aa16.21■□□□□ 0.19
SSSCA1-203ENST00000526877 COL11A2P13942 1736 aaPredicted RBP16.21■□□□□ 0.19
SSSCA1-203ENST00000526877 ERVV-1B6SEH8 477 aa16.2■□□□□ 0.18
SSSCA1-203ENST00000526877 BCAR3O75815 825 aa16.2■□□□□ 0.18
SSSCA1-203ENST00000526877 PDIA6Q15084 440 aa16.2■□□□□ 0.18
SSSCA1-203ENST00000526877 C9orf131Q5VYM1 1079 aa16.2■□□□□ 0.18
SSSCA1-203ENST00000526877 TTLL7Q6ZT98 887 aa16.2■□□□□ 0.18
SSSCA1-203ENST00000526877 SMC4Q9NTJ3 1288 aa16.2■□□□□ 0.18
SSSCA1-203ENST00000526877 ERBB4Q15303 1308 aa16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 KLRG2A4D1S0 409 aaPredicted RBP16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 SRGNP10124 158 aa16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 PRELPP51888 382 aa16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 KRT24Q2M2I5 525 aa16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 NBPF5PQ86XG9 351 aaPredicted RBP16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 SSH1Q8WYL5 1049 aa16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 NIP7Q9Y221 180 aaKnown RBP eCLIP16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 MAP3K15Q6ZN16 1313 aa16.19■□□□□ 0.18
SSSCA1-203ENST00000526877 CACNA1FO60840 1977 aa16.18■□□□□ 0.18
SSSCA1-203ENST00000526877 KIF3CO14782 793 aa16.18■□□□□ 0.18
SSSCA1-203ENST00000526877 HOXB7P09629 217 aa16.18■□□□□ 0.18
SSSCA1-203ENST00000526877 MYL6BP14649 208 aa16.18■□□□□ 0.18
SSSCA1-203ENST00000526877 TPTE2Q6XPS3 522 aa16.18■□□□□ 0.18
SSSCA1-203ENST00000526877 SLX4Q8IY92 1834 aa16.17■□□□□ 0.18
SSSCA1-203ENST00000526877 CCDC88AQ3V6T2 1871 aa16.17■□□□□ 0.18
SSSCA1-203ENST00000526877 ST5P78524 1137 aa16.17■□□□□ 0.18
SSSCA1-203ENST00000526877 ZNF622Q969S3 477 aaKnown RBP eCLIP16.17■□□□□ 0.18
SSSCA1-203ENST00000526877 BCL2L13Q9BXK5 485 aa16.17■□□□□ 0.18
SSSCA1-203ENST00000526877 GTF3C3Q9Y5Q9 886 aa16.17■□□□□ 0.18
SSSCA1-203ENST00000526877 EIF2S2P20042 333 aaKnown RBP16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 BRPF1P55201 1214 aaPredicted RBP16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 RASSF7Q02833 373 aa16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 PROSER3Q2NL68 480 aa16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 CCDC30Q5VVM6 783 aa16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 STYK1Q6J9G0 422 aa16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 FRAT1Q92837 279 aaPredicted RBP16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 RNF181Q9P0P0 153 aa16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 KIF16BQ96L93 1317 aa16.16■□□□□ 0.18
SSSCA1-203ENST00000526877 NFKBIEO00221 500 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms