RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 PRR5LQ6MZQ0 368 aa21.17■□□□□ 0.98
LSM1-205ENST00000523511 TTLL6Q8N841 843 aa21.17■□□□□ 0.98
LSM1-205ENST00000523511 IFT57Q9NWB7 429 aa21.17■□□□□ 0.98
LSM1-205ENST00000523511 MAP3K15Q6ZN16 1313 aa21.16■□□□□ 0.98
LSM1-205ENST00000523511 NYXQ9GZU5 481 aa21.16■□□□□ 0.98
LSM1-205ENST00000523511 NCBP3Q53F19 620 aaKnown RBP21.15■□□□□ 0.98
LSM1-205ENST00000523511 ZNF622Q969S3 477 aaKnown RBP eCLIP21.15■□□□□ 0.98
LSM1-205ENST00000523511 DLG5Q8TDM6 1919 aa21.15■□□□□ 0.98
LSM1-205ENST00000523511 HLFQ16534 295 aa21.13■□□□□ 0.97
LSM1-205ENST00000523511 CCDC27Q2M243 656 aa21.13■□□□□ 0.97
LSM1-205ENST00000523511 CCDC184Q52MB2 194 aa21.13■□□□□ 0.97
LSM1-205ENST00000523511 CNKSR1Q969H4 720 aa21.13■□□□□ 0.97
LSM1-205ENST00000523511 HSP90AB3PQ58FF7 597 aa21.12■□□□□ 0.97
LSM1-205ENST00000523511 HDGFL1Q5TGJ6 251 aa21.12■□□□□ 0.97
LSM1-205ENST00000523511 ZBTB3Q9H5J0 574 aa21.12■□□□□ 0.97
LSM1-205ENST00000523511 DDX21Q9NR30 783 aaKnown RBP eCLIP21.12■□□□□ 0.97
LSM1-205ENST00000523511 DBF4Q9UBU7 674 aaPredicted RBP21.12■□□□□ 0.97
LSM1-205ENST00000523511 KIF13BQ9NQT8 1826 aa21.12■□□□□ 0.97
LSM1-205ENST00000523511 KDM3BQ7LBC6 1761 aa21.11■□□□□ 0.97
LSM1-205ENST00000523511 UTRNP46939 3433 aa21.11■□□□□ 0.97
LSM1-205ENST00000523511 GIGYF2Q6Y7W6 1299 aaKnown RBP21.11■□□□□ 0.97
LSM1-205ENST00000523511 TTLL7Q6ZT98 887 aa21.11■□□□□ 0.97
LSM1-205ENST00000523511 PPP1R42Q7Z4L9 355 aa21.11■□□□□ 0.97
LSM1-205ENST00000523511 NECTIN2Q92692 538 aa21.11■□□□□ 0.97
LSM1-205ENST00000523511 MBIPQ9NS73 344 aa21.11■□□□□ 0.97
LSM1-205ENST00000523511 FAM177BA6PVY3 158 aa21.1■□□□□ 0.97
LSM1-205ENST00000523511 ZNF853P0CG23 659 aa21.1■□□□□ 0.97
LSM1-205ENST00000523511 PARP10Q53GL7 1025 aa21.1■□□□□ 0.97
LSM1-205ENST00000523511 DUSP27Q5VZP5 1158 aa21.1■□□□□ 0.97
LSM1-205ENST00000523511 STYK1Q6J9G0 422 aa21.1■□□□□ 0.97
LSM1-205ENST00000523511 MASTLQ96GX5 879 aa21.1■□□□□ 0.97
LSM1-205ENST00000523511 PDIA6Q15084 440 aa21.09■□□□□ 0.97
LSM1-205ENST00000523511 COPS6Q7L5N1 327 aa21.09■□□□□ 0.97
LSM1-205ENST00000523511 CCDC24Q8N4L8 307 aa21.09■□□□□ 0.97
LSM1-205ENST00000523511 HYPKQ9NX55 129 aa21.09■□□□□ 0.97
LSM1-205ENST00000523511 AIMP1Q12904 312 aaKnown RBP21.08■□□□□ 0.97
LSM1-205ENST00000523511 SOGA3Q5TF21 947 aa21.08■□□□□ 0.97
LSM1-205ENST00000523511 GPBP1L1Q9HC44 474 aaPredicted RBP21.08■□□□□ 0.97
LSM1-205ENST00000523511 CHD4Q14839 1912 aa21.08■□□□□ 0.96
LSM1-205ENST00000523511 SRGNP10124 158 aa21.07■□□□□ 0.96
LSM1-205ENST00000523511 NPR1P16066 1061 aa21.07■□□□□ 0.96
LSM1-205ENST00000523511 ALDH1B1P30837 517 aa21.07■□□□□ 0.96
LSM1-205ENST00000523511 SCN7AQ01118 1682 aa21.07■□□□□ 0.96
LSM1-205ENST00000523511 KRT24Q2M2I5 525 aa21.06■□□□□ 0.96
LSM1-205ENST00000523511 WWC1Q8IX03 1113 aa21.06■□□□□ 0.96
LSM1-205ENST00000523511 ZNF34Q8IZ26 560 aa21.06■□□□□ 0.96
LSM1-205ENST00000523511 XAGE3Q8WTP9 111 aa21.06■□□□□ 0.96
LSM1-205ENST00000523511 GPTP24298 496 aa21.05■□□□□ 0.96
LSM1-205ENST00000523511 FAM9BQ8IZU0 186 aa21.05■□□□□ 0.96
LSM1-205ENST00000523511 CHPF2Q9P2E5 772 aa21.05■□□□□ 0.96
LSM1-205ENST00000523511 LAMB4A4D0S4 1761 aa21.05■□□□□ 0.96
LSM1-205ENST00000523511 N4BP2Q86UW6 1770 aaPredicted RBP21.05■□□□□ 0.96
LSM1-205ENST00000523511 GOLGB1Q14789 3259 aaKnown RBP21.05■□□□□ 0.96
LSM1-205ENST00000523511 IL16Q14005 1332 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 ATP10DQ9P241 1426 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 NRXN2Q9P2S2 1712 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 KLRG2A4D1S0 409 aaPredicted RBP21.04■□□□□ 0.96
LSM1-205ENST00000523511 ANXA1P04083 346 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 PROSER3Q2NL68 480 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 CCDC30Q5VVM6 783 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 C9orf131Q5VYM1 1079 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 ANKRD13DQ6ZTN6 518 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 LRP10Q7Z4F1 713 aa21.04■□□□□ 0.96
LSM1-205ENST00000523511 ELL2O00472 640 aaPredicted RBP21.03■□□□□ 0.96
LSM1-205ENST00000523511 UTP14AQ9BVJ6 771 aaKnown RBP21.03■□□□□ 0.96
LSM1-205ENST00000523511 RNF123Q5XPI4 1314 aa21.03■□□□□ 0.96
LSM1-205ENST00000523511 IBTKQ9P2D0 1353 aaPredicted RBP21.02■□□□□ 0.96
LSM1-205ENST00000523511 C21orf2O43822 256 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 LMNB1P20700 586 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 SUSD4Q5VX71 490 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 WDR63Q8IWG1 891 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 PLBD2Q8NHP8 589 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 NLRP3Q96P20 1036 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 RNF181Q9P0P0 153 aa21.02■□□□□ 0.96
LSM1-205ENST00000523511 TCIRG1Q13488 830 aa21.01■□□□□ 0.95
LSM1-205ENST00000523511 ZNF526Q8TF50 670 aaPredicted RBP21.01■□□□□ 0.95
LSM1-205ENST00000523511 RPGRQ92834 1020 aaKnown RBP21.01■□□□□ 0.95
LSM1-205ENST00000523511 TMX4Q9H1E5 349 aaPredicted RBP21.01■□□□□ 0.95
LSM1-205ENST00000523511 KIAA1551Q9HCM1 1747 aa21.01■□□□□ 0.95
LSM1-205ENST00000523511 DDX58O95786 925 aaKnown RBP21■□□□□ 0.95
LSM1-205ENST00000523511 GOLGA2Q08379 1002 aa21■□□□□ 0.95
LSM1-205ENST00000523511 ERFEQ4G0M1 354 aa21■□□□□ 0.95
LSM1-205ENST00000523511 PRPF40BQ6NWY9 871 aaKnown RBP21■□□□□ 0.95
LSM1-205ENST00000523511 NUTM1Q86Y26 1132 aa21■□□□□ 0.95
LSM1-205ENST00000523511 ZNF219Q9P2Y4 722 aaPredicted RBP21■□□□□ 0.95
LSM1-205ENST00000523511 AFDNP55196 1824 aaKnown RBP20.99■□□□□ 0.95
LSM1-205ENST00000523511 ADCY9O60503 1353 aa20.99■□□□□ 0.95
LSM1-205ENST00000523511 RIC3Q7Z5B4 369 aa20.99■□□□□ 0.95
LSM1-205ENST00000523511 STK31Q9BXU1 1019 aa20.99■□□□□ 0.95
LSM1-205ENST00000523511 SALL2Q9Y467 1007 aaPredicted RBP20.99■□□□□ 0.95
LSM1-205ENST00000523511 BCORQ6W2J9 1755 aa20.99■□□□□ 0.95
LSM1-205ENST00000523511 KDM2BQ8NHM5 1336 aa20.99■□□□□ 0.95
LSM1-205ENST00000523511 ZC3H4Q9UPT8 1303 aaKnown RBP20.99■□□□□ 0.95
LSM1-205ENST00000523511 C8orf58Q8NAV2 365 aa20.98■□□□□ 0.95
LSM1-205ENST00000523511 RBM17Q96I25 401 aaKnown RBP20.98■□□□□ 0.95
LSM1-205ENST00000523511 UBN2Q6ZU65 1347 aa20.98■□□□□ 0.95
LSM1-205ENST00000523511 NTSR2O95665 410 aa20.97■□□□□ 0.95
LSM1-205ENST00000523511 GRIPAP1Q4V328 841 aa20.97■□□□□ 0.95
LSM1-205ENST00000523511 SLC10A5Q5PT55 438 aa20.97■□□□□ 0.95
LSM1-205ENST00000523511 RTKN2Q8IZC4 609 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms