RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 DNTTIP2Q5QJE6 756 aaKnown RBP12.18□□□□□ -0.46
MCF2-209ENST00000520602 LMBR1LQ6UX01 489 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 UNC5CLQ8IV45 518 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 SUCLG2Q96I99 432 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 ANTXR1Q9H6X2 564 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 TOMM22Q9NS69 142 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 ADAMTS2O95450 1211 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 ZRSR1Q15695 479 aaKnown RBP12.18□□□□□ -0.46
MCF2-209ENST00000520602 CCDC83Q8IWF9 413 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 EVI5LQ96CN4 794 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 CEP126Q9P2H0 1117 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 GPTP24298 496 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 NASPP49321 788 aaPredicted RBP12.18□□□□□ -0.46
MCF2-209ENST00000520602 BLOC1S2Q6QNY1 142 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 GDPD2Q9HCC8 539 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 ADGRB2O60241 1585 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 ERBB3P21860 1342 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 DTNBO60941 627 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 RAB3GAP1Q15042 981 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 TCEANC2Q96MN5 208 aa12.18□□□□□ -0.46
MCF2-209ENST00000520602 PHKG2P15735 406 aa12.17□□□□□ -0.46
MCF2-209ENST00000520602 CPA1P15085 419 aa12.17□□□□□ -0.46
MCF2-209ENST00000520602 REREQ9P2R6 1566 aa12.17□□□□□ -0.46
MCF2-209ENST00000520602 KDRP35968 1356 aa12.17□□□□□ -0.46
MCF2-209ENST00000520602 WDR33Q9C0J8 1336 aaKnown RBP12.16□□□□□ -0.46
MCF2-209ENST00000520602 DIP2AQ14689 1571 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.16□□□□□ -0.46
MCF2-209ENST00000520602 CSPP1Q1MSJ5 1256 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 CNNM1Q9NRU3 951 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 IBTKQ9P2D0 1353 aaPredicted RBP12.16□□□□□ -0.46
MCF2-209ENST00000520602 KIF20BQ96Q89 1820 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 A1BGP04217 495 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 PHF14O94880 888 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 STARD3NLO95772 234 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 IL2RBP14784 551 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 DDX46Q7L014 1031 aaKnown RBP12.16□□□□□ -0.46
MCF2-209ENST00000520602 CWC25Q9NXE8 425 aaPredicted RBP12.16□□□□□ -0.46
MCF2-209ENST00000520602 PALD1Q9ULE6 856 aa12.16□□□□□ -0.46
MCF2-209ENST00000520602 ADGRL3Q9HAR2 1447 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 PANK2Q9BZ23 570 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 GNL2Q13823 731 aaKnown RBP12.15□□□□□ -0.46
MCF2-209ENST00000520602 LRRFIP1Q32MZ4 808 aaKnown RBP12.15□□□□□ -0.46
MCF2-209ENST00000520602 CCDC158Q5M9N0 1113 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 TTC39AQ5SRH9 613 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 FERMT3Q86UX7 667 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 SLAIN2Q9P270 581 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 LIMCH1Q9UPQ0 1083 aa12.15□□□□□ -0.46
MCF2-209ENST00000520602 SNRKQ9NRH2 765 aa12.15□□□□□ -0.47
MCF2-209ENST00000520602 PIP4K2BP78356 416 aa12.14□□□□□ -0.47
MCF2-209ENST00000520602 METTL22Q9BUU2 404 aaPredicted RBP12.14□□□□□ -0.47
MCF2-209ENST00000520602 NDUFB9Q9Y6M9 179 aa12.14□□□□□ -0.47
MCF2-209ENST00000520602 GOLIM4O00461 696 aa12.14□□□□□ -0.47
MCF2-209ENST00000520602 MBD3O95983 291 aa12.14□□□□□ -0.47
MCF2-209ENST00000520602 GCKRQ14397 625 aa12.14□□□□□ -0.47
MCF2-209ENST00000520602 LARP1BQ659C4 914 aaKnown RBP12.14□□□□□ -0.47
MCF2-209ENST00000520602 CEP170BQ9Y4F5 1589 aaPredicted RBP12.14□□□□□ -0.47
MCF2-209ENST00000520602 TFCP2Q12800 502 aa12.14□□□□□ -0.47
MCF2-209ENST00000520602 XRCC6P12956 609 aaKnown RBP eCLIP12.13□□□□□ -0.47
MCF2-209ENST00000520602 ANAPC15P60006 121 aa12.13□□□□□ -0.47
MCF2-209ENST00000520602 RBM27Q9P2N5 1060 aaKnown RBP12.13□□□□□ -0.47
MCF2-209ENST00000520602 TTC41PQ6P2S7 1318 aa12.13□□□□□ -0.47
MCF2-209ENST00000520602 NMIQ13287 307 aaPredicted RBP12.13□□□□□ -0.47
MCF2-209ENST00000520602 PKP1Q13835 747 aa12.13□□□□□ -0.47
MCF2-209ENST00000520602 NECAB1Q8N987 351 aa12.13□□□□□ -0.47
MCF2-209ENST00000520602 RBM8AQ9Y5S9 174 aaKnown RBP12.13□□□□□ -0.47
MCF2-209ENST00000520602 SYCE3A1L190 88 aa12.13□□□□□ -0.47
MCF2-209ENST00000520602 IFIT1P09914 478 aaKnown RBP12.13□□□□□ -0.47
MCF2-209ENST00000520602 OSBPL3Q9H4L5 887 aa12.13□□□□□ -0.47
MCF2-209ENST00000520602 NEURL1BA8MQ27 555 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 DRC7Q8IY82 874 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 ITSN1Q15811 1721 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 EXOC5O00471 708 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 SGSM2O43147 1006 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 KDM4AO75164 1064 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 EDC3Q96F86 508 aaKnown RBP12.12□□□□□ -0.47
MCF2-209ENST00000520602 KIF3AQ9Y496 699 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 CEBPZQ03701 1054 aaKnown RBP12.12□□□□□ -0.47
MCF2-209ENST00000520602 EAF2Q96CJ1 260 aaPredicted RBP12.12□□□□□ -0.47
MCF2-209ENST00000520602 DDX11Q96FC9 970 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 CHAMP1Q96JM3 812 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 FAM227BQ96M60 508 aa12.12□□□□□ -0.47
MCF2-209ENST00000520602 METTL24Q5JXM2 366 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 BICD2Q8TD16 824 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 BTG4Q9NY30 223 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 CPLX1O14810 134 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 AK2P54819 239 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 TIMM10P62072 90 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 IFIT5Q13325 482 aaKnown RBP12.11□□□□□ -0.47
MCF2-209ENST00000520602 RALYLQ86SE5 291 aaKnown RBP12.11□□□□□ -0.47
MCF2-209ENST00000520602 PPFIA3O75145 1194 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 SF3A1Q15459 793 aaKnown RBP12.11□□□□□ -0.47
MCF2-209ENST00000520602 ZSCAN31Q96LW9 406 aaPredicted RBP12.11□□□□□ -0.47
MCF2-209ENST00000520602 KIF2CQ99661 725 aa12.11□□□□□ -0.47
MCF2-209ENST00000520602 TRDNQ13061 729 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 MPNDQ8N594 471 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 STAP2Q9UGK3 403 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 TRMT112Q9UI30 125 aaKnown RBP12.1□□□□□ -0.47
MCF2-209ENST00000520602 CYP27B1O15528 508 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 KLHL40Q2TBA0 621 aa12.1□□□□□ -0.47
MCF2-209ENST00000520602 PCDH11XQ9BZA7 1347 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms