RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 CNTROBQ8N137 903 aa15.23■□□□□ 0.03
LIMCH1-221ENST00000515785 CNKSR1Q969H4 720 aa15.23■□□□□ 0.03
LIMCH1-221ENST00000515785 PDZRN3Q9UPQ7 1066 aa15.23■□□□□ 0.03
LIMCH1-221ENST00000515785 A0A087WZG4 1122 aa15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 RASSF10A6NK89 507 aa15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 EIF5P55010 431 aaKnown RBP15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 MAP2K1Q02750 393 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 PAXIP1Q6ZW49 1069 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 L3MBTL3Q96JM7 780 aaPredicted RBP15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 HACL1Q9UJ83 578 aa15.22■□□□□ 0.03
LIMCH1-221ENST00000515785 ZNF541Q9H0D2 1346 aa15.21■□□□□ 0.03
LIMCH1-221ENST00000515785 STARD3NLO95772 234 aa15.21■□□□□ 0.03
LIMCH1-221ENST00000515785 EPHX2P34913 555 aa15.21■□□□□ 0.03
LIMCH1-221ENST00000515785 STYK1Q6J9G0 422 aa15.21■□□□□ 0.03
LIMCH1-221ENST00000515785 ZNF277Q9NRM2 450 aaPredicted RBP15.21■□□□□ 0.03
LIMCH1-221ENST00000515785 SRGNP10124 158 aa15.2■□□□□ 0.02
LIMCH1-221ENST00000515785 MORC1Q86VD1 984 aa15.2■□□□□ 0.02
LIMCH1-221ENST00000515785 MASTLQ96GX5 879 aa15.2■□□□□ 0.02
LIMCH1-221ENST00000515785 SETDB2Q96T68 719 aa15.2■□□□□ 0.02
LIMCH1-221ENST00000515785 TSKSQ9UJT2 592 aa15.2■□□□□ 0.02
LIMCH1-221ENST00000515785 IL13P35225 146 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 RGS19P49795 217 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 FMR1Q06787 632 aaKnown RBP eCLIP15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 SOGA3Q5TF21 947 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 OLFM4Q6UX06 510 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 VSIG10Q8N0Z9 540 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 CNBD1Q8NA66 436 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 BEGAINQ9BUH8 593 aa15.19■□□□□ 0.02
LIMCH1-221ENST00000515785 RNF123Q5XPI4 1314 aa15.18■□□□□ 0.02
LIMCH1-221ENST00000515785 HMOX1P09601 288 aa15.18■□□□□ 0.02
LIMCH1-221ENST00000515785 ST5P78524 1137 aa15.18■□□□□ 0.02
LIMCH1-221ENST00000515785 PANK3Q9H999 370 aa15.18■□□□□ 0.02
LIMCH1-221ENST00000515785 CCDC93Q567U6 631 aa15.17■□□□□ 0.02
LIMCH1-221ENST00000515785 CYP4F22Q6NT55 531 aa15.17■□□□□ 0.02
LIMCH1-221ENST00000515785 PNMA8AQ86V59 439 aaPredicted RBP15.17■□□□□ 0.02
LIMCH1-221ENST00000515785 TTC5Q8N0Z6 440 aa15.17■□□□□ 0.02
LIMCH1-221ENST00000515785 C7orf43Q8WVR3 580 aa15.17■□□□□ 0.02
LIMCH1-221ENST00000515785 CAPNS2Q96L46 248 aa15.17■□□□□ 0.02
LIMCH1-221ENST00000515785 NPM3O75607 178 aaKnown RBP15.16■□□□□ 0.02
LIMCH1-221ENST00000515785 A1BGP04217 495 aa15.16■□□□□ 0.02
LIMCH1-221ENST00000515785 FKBP4Q02790 459 aaKnown RBP eCLIP15.16■□□□□ 0.02
LIMCH1-221ENST00000515785 MTHFSDQ2M296 383 aaKnown RBP15.16■□□□□ 0.02
LIMCH1-221ENST00000515785 GPR101Q96P66 508 aaPredicted RBP15.16■□□□□ 0.02
LIMCH1-221ENST00000515785 NPM2Q86SE8 214 aaKnown RBP15.15■□□□□ 0.02
LIMCH1-221ENST00000515785 DDX21Q9NR30 783 aaKnown RBP eCLIP15.15■□□□□ 0.02
LIMCH1-221ENST00000515785 GJA3Q9Y6H8 435 aa15.15■□□□□ 0.02
LIMCH1-221ENST00000515785 ADAMTSL1Q8N6G6 1762 aa15.15■□□□□ 0.02
LIMCH1-221ENST00000515785 ARFGEF2Q9Y6D5 1785 aa15.14■□□□□ 0.01
LIMCH1-221ENST00000515785 AOC2O75106 756 aa15.14■□□□□ 0.01
LIMCH1-221ENST00000515785 SYNE4Q8N205 404 aa15.14■□□□□ 0.01
LIMCH1-221ENST00000515785 ZNF496Q96IT1 587 aaPredicted RBP15.14■□□□□ 0.01
LIMCH1-221ENST00000515785 CAMTA2O94983 1202 aa15.13■□□□□ 0.01
LIMCH1-221ENST00000515785 NBPF5PQ86XG9 351 aaPredicted RBP15.13■□□□□ 0.01
LIMCH1-221ENST00000515785 MCOLN1Q9GZU1 580 aa15.13■□□□□ 0.01
LIMCH1-221ENST00000515785 MRC1P22897 1456 aa15.13■□□□□ 0.01
LIMCH1-221ENST00000515785 SCN7AQ01118 1682 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 UBR2Q8IWV8 1755 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 FAM177BA6PVY3 158 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 TRAF5O00463 557 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 NPR1P16066 1061 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 DSG3P32926 999 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 IL6STP40189 918 aaPredicted RBP15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 IARSP41252 1262 aaKnown RBP15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 ECE1P42892 770 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 PIP4K2AP48426 406 aaPredicted RBP15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 TEX13AQ9BXU3 409 aaPredicted RBP15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 CASP8AP2Q9UKL3 1982 aa15.12■□□□□ 0.01
LIMCH1-221ENST00000515785 FZD9O00144 591 aa15.11■□□□□ 0.01
LIMCH1-221ENST00000515785 CST9Q5W186 159 aa15.11■□□□□ 0.01
LIMCH1-221ENST00000515785 DZIP3Q86Y13 1208 aaKnown RBP15.11■□□□□ 0.01
LIMCH1-221ENST00000515785 RTKN2Q8IZC4 609 aa15.11■□□□□ 0.01
LIMCH1-221ENST00000515785 GPC2Q8N158 579 aa15.11■□□□□ 0.01
LIMCH1-221ENST00000515785 JDP2Q8WYK2 163 aa15.1■□□□□ 0.01
LIMCH1-221ENST00000515785 HEG1Q9ULI3 1381 aa15.1■□□□□ 0.01
LIMCH1-221ENST00000515785 LMOD1P29536 600 aaPredicted RBP15.09■□□□□ 0.01
LIMCH1-221ENST00000515785 EPS15P42566 896 aa15.09■□□□□ 0.01
LIMCH1-221ENST00000515785 EIF6P56537 245 aaKnown RBP15.09■□□□□ 0.01
LIMCH1-221ENST00000515785 TEFQ10587 303 aa15.09■□□□□ 0.01
LIMCH1-221ENST00000515785 DGKZQ13574 1117 aa15.09■□□□□ 0.01
LIMCH1-221ENST00000515785 ZNF790Q6PG37 636 aa15.09■□□□□ 0.01
LIMCH1-221ENST00000515785 TRPM7Q96QT4 1865 aa15.08■□□□□ 0.01
LIMCH1-221ENST00000515785 TNRC18O15417 2968 aaPredicted RBP15.08■□□□□ 0
LIMCH1-221ENST00000515785 IL17REQ8NFR9 667 aa15.08■□□□□ 0
LIMCH1-221ENST00000515785 KCNQ3O43525 872 aa15.07■□□□□ 0
LIMCH1-221ENST00000515785 TPTE2Q6XPS3 522 aa15.07■□□□□ 0
LIMCH1-221ENST00000515785 FMNL2Q96PY5 1086 aa15.07■□□□□ 0
LIMCH1-221ENST00000515785 TLL2Q9Y6L7 1015 aa15.07■□□□□ 0
LIMCH1-221ENST00000515785 LTBP1Q14766 1721 aa15.06■□□□□ 0
LIMCH1-221ENST00000515785 ALDH1B1P30837 517 aa15.06■□□□□ 0
LIMCH1-221ENST00000515785 MAP2K2P36507 400 aa15.06■□□□□ 0
LIMCH1-221ENST00000515785 USP16Q9Y5T5 823 aa15.06■□□□□ 0
LIMCH1-221ENST00000515785 THSD7BQ9C0I4 1608 aa15.06■□□□□ 0
LIMCH1-221ENST00000515785 KLRG2A4D1S0 409 aaPredicted RBP15.05■□□□□ -0
LIMCH1-221ENST00000515785 NIP7Q9Y221 180 aaKnown RBP eCLIP15.05■□□□□ -0
LIMCH1-221ENST00000515785 KNSTRNQ9Y448 316 aa15.05■□□□□ -0
LIMCH1-221ENST00000515785 BCORQ6W2J9 1755 aa15.05■□□□□ -0
LIMCH1-221ENST00000515785 PRAMEF22A3QJZ6 481 aa15.04■□□□□ -0
LIMCH1-221ENST00000515785 TCERG1O14776 1098 aaKnown RBP15.04■□□□□ -0
LIMCH1-221ENST00000515785 GTF2E1P29083 439 aaPredicted RBP15.04■□□□□ -0
LIMCH1-221ENST00000515785 SCNN1DP51172 638 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms