RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 VPS36Q86VN1 386 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 CCDC150Q8NCX0 1101 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 ARFGAP3Q9NP61 516 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 NCOA1Q15788 1441 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 IVLP07476 585 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 SPECC1LQ69YQ0 1117 aa15.38■□□□□ 0.05
TCOF1-214ENST00000515035 GTPBP4Q9BZE4 634 aaKnown RBP15.38■□□□□ 0.05
TCOF1-214ENST00000515035 BIVM-ERCC5R4GMW8 1640 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 WWC2Q6AWC2 1192 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 RSPH14Q9UHP6 348 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 LRPPRCP42704 1394 aaKnown RBP15.37■□□□□ 0.05
TCOF1-214ENST00000515035 NFE2L2Q16236 605 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 TDRD12Q587J7 1177 aaKnown RBP15.37■□□□□ 0.05
TCOF1-214ENST00000515035 TBC1D9Q6ZT07 1266 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 NKTRP30414 1462 aaKnown RBP15.37■□□□□ 0.05
TCOF1-214ENST00000515035 NSD3Q9BZ95 1437 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 UBE4AQ14139 1066 aa15.37■□□□□ 0.05
TCOF1-214ENST00000515035 MYL6BP14649 208 aa15.36■□□□□ 0.05
TCOF1-214ENST00000515035 BMP2KLQ5H9B9 411 aa15.36■□□□□ 0.05
TCOF1-214ENST00000515035 MAATS1Q7Z4T9 603 aa15.36■□□□□ 0.05
TCOF1-214ENST00000515035 LIG1P18858 919 aa15.36■□□□□ 0.05
TCOF1-214ENST00000515035 GIMAP6Q6P9H5 292 aa15.36■□□□□ 0.05
TCOF1-214ENST00000515035 PPP1R12BO60237 982 aaPredicted RBP15.36■□□□□ 0.05
TCOF1-214ENST00000515035 GJB2P29033 226 aa15.36■□□□□ 0.05
TCOF1-214ENST00000515035 LARP6Q9BRS8 491 aaKnown RBP15.36■□□□□ 0.05
TCOF1-214ENST00000515035 GIGYF2Q6Y7W6 1299 aaKnown RBP15.36■□□□□ 0.05
TCOF1-214ENST00000515035 ALS2CR12Q96Q35 445 aa15.35■□□□□ 0.05
TCOF1-214ENST00000515035 IDH1O75874 414 aaKnown RBP15.35■□□□□ 0.05
TCOF1-214ENST00000515035 ALDH1L2Q3SY69 923 aa15.35■□□□□ 0.05
TCOF1-214ENST00000515035 CCDC94Q9BW85 323 aaPredicted RBP15.35■□□□□ 0.05
TCOF1-214ENST00000515035 CCDC186Q7Z3E2 898 aa15.35■□□□□ 0.05
TCOF1-214ENST00000515035 SKILP12757 684 aa15.35■□□□□ 0.05
TCOF1-214ENST00000515035 FAM135AQ9P2D6 1515 aa15.35■□□□□ 0.05
TCOF1-214ENST00000515035 MCM6Q14566 821 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 MPHOSPH8Q99549 860 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 AIDAQ96BJ3 306 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 BOLA2Q9H3K6 86 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 HSPA4P34932 840 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 TNRQ92752 1358 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 BTBD11A6QL63 1104 aa15.34■□□□□ 0.05
TCOF1-214ENST00000515035 HMGB1P09429 215 aaKnown RBP15.34■□□□□ 0.05
TCOF1-214ENST00000515035 THUMPD2Q9BTF0 503 aaKnown RBP15.34■□□□□ 0.05
TCOF1-214ENST00000515035 WASLO00401 505 aaPredicted RBP15.33■□□□□ 0.05
TCOF1-214ENST00000515035 DNAI1Q9UI46 699 aa15.33■□□□□ 0.05
TCOF1-214ENST00000515035 ATP2C2O75185 946 aa15.33■□□□□ 0.04
TCOF1-214ENST00000515035 CEP112Q8N8E3 955 aa15.33■□□□□ 0.04
TCOF1-214ENST00000515035 TSG101Q99816 390 aa15.33■□□□□ 0.04
TCOF1-214ENST00000515035 TTC12Q9H892 705 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-214ENST00000515035 ASXL2Q76L83 1435 aa15.33■□□□□ 0.04
TCOF1-214ENST00000515035 MATR3P43243 847 aaKnown RBP eCLIP15.33■□□□□ 0.04
TCOF1-214ENST00000515035 JADE2Q9NQC1 790 aa15.33■□□□□ 0.04
TCOF1-214ENST00000515035 RNF216Q9NWF9 866 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-214ENST00000515035 PHAXQ9H814 394 aaKnown RBP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 POTEJP0CG39 1038 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 KRI1Q8N9T8 703 aaKnown RBP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 CCDC196A0A1B0GTZ2 297 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 GNAT3A8MTJ3 354 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 IGSF3O75054 1194 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 IRX3P78415 501 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 TAOK3Q9H2K8 898 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 SLU7O95391 586 aaKnown RBP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 FGFR1OPO95684 399 aaKnown RBP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 STARD3NLO95772 234 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 DESP17661 470 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 CEP63Q96MT8 703 aa15.32■□□□□ 0.04
TCOF1-214ENST00000515035 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 V9GYY5 206 aaPredicted RBP15.32■□□□□ 0.04
TCOF1-214ENST00000515035 CAPN2P17655 700 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 FAM200AQ8TCP9 573 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 PPP1R1BQ9UD71 204 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-214ENST00000515035 FOXO3O43524 673 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.31■□□□□ 0.04
TCOF1-214ENST00000515035 TMCO5BA8MYB1 307 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 HSF2BPO75031 334 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 CADPS2Q86UW7 1296 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 PLCH2O75038 1416 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 AMOTQ4VCS5 1084 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 DUSP27Q5VZP5 1158 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 ADGRF5Q8IZF2 1346 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 CTNNBL1Q8WYA6 563 aaPredicted RBP15.31■□□□□ 0.04
TCOF1-214ENST00000515035 LRP2BPQ9P2M1 347 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 UNC13AQ9UPW8 1703 aa15.31■□□□□ 0.04
TCOF1-214ENST00000515035 MACROD2A1Z1Q3 448 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 STAMBPO95630 424 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 IGHDP01880 384 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 TRIM27P14373 513 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 MTIF2P46199 727 aaKnown RBP15.3■□□□□ 0.04
TCOF1-214ENST00000515035 CCT2P78371 535 aaKnown RBP15.3■□□□□ 0.04
TCOF1-214ENST00000515035 CTAGE15A4D2H0 777 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 CTAGE8P0CG41 777 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 ISM2Q6H9L7 571 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 CTAGE6Q86UF2 777 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 CTAGE4Q8IX94 777 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 HOOK3Q86VS8 718 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 MICALL1Q8N3F8 863 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 HS1BP3Q53T59 392 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 CCDC82Q8N4S0 544 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 ZNF76P36508 570 aa15.3■□□□□ 0.04
TCOF1-214ENST00000515035 LARP1Q6PKG0 1096 aaKnown RBP15.3■□□□□ 0.04
TCOF1-214ENST00000515035 EHBP1Q8NDI1 1231 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms