RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 SOS1Q07889 1333 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-205ENST00000514271 U2AF1L5P0DN76 240 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-205ENST00000514271 U2AF1Q01081 240 aaKnown RBP eCLIP9.19□□□□□ -0.94
CLIP1-205ENST00000514271 CCDC173Q0VFZ6 552 aa9.19□□□□□ -0.94
CLIP1-205ENST00000514271 UTP14CQ5TAP6 766 aaKnown RBP9.19□□□□□ -0.94
CLIP1-205ENST00000514271 TMED8Q6PL24 325 aaPredicted RBP9.19□□□□□ -0.94
CLIP1-205ENST00000514271 U2SURPO15042 1029 aaKnown RBP9.18□□□□□ -0.94
CLIP1-205ENST00000514271 SLC27A3Q5K4L6 730 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 RGS3P49796 1198 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 ZNF530Q6P9A1 599 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-205ENST00000514271 TICAM2Q86XR7 235 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 NFE2L2Q16236 605 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 ATF7IPQ6VMQ6 1270 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 MARCH10Q8NA82 808 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-205ENST00000514271 GPT2Q8TD30 523 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 RWDD1Q9H446 243 aaPredicted RBP9.18□□□□□ -0.94
CLIP1-205ENST00000514271 CEMIPQ8WUJ3 1361 aa9.18□□□□□ -0.94
CLIP1-205ENST00000514271 NUP188Q5SRE5 1749 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 GNAT3A8MTJ3 354 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 ZNF710Q8N1W2 664 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 SSH1Q8WYL5 1049 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 LAMB4A4D0S4 1761 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 MCM5P33992 734 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 SKOR2Q2VWA4 1001 aaPredicted RBP9.17□□□□□ -0.94
CLIP1-205ENST00000514271 SPTLC3Q9NUV7 552 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 ZSCAN30Q86W11 494 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 TMEM87AQ8NBN3 555 aa9.17□□□□□ -0.94
CLIP1-205ENST00000514271 PTMSP20962 102 aa9.16□□□□□ -0.94
CLIP1-205ENST00000514271 FBLN1P23142 703 aa9.16□□□□□ -0.94
CLIP1-205ENST00000514271 PRKAR2BP31323 418 aa9.16□□□□□ -0.94
CLIP1-205ENST00000514271 RTF1Q92541 710 aaKnown RBP9.16□□□□□ -0.94
CLIP1-205ENST00000514271 OSBPL3Q9H4L5 887 aa9.16□□□□□ -0.94
CLIP1-205ENST00000514271 FUCA2Q9BTY2 467 aa9.16□□□□□ -0.94
CLIP1-205ENST00000514271 ZSCAN20P17040 1043 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 GLIPR1L2Q4G1C9 344 aa9.15□□□□□ -0.94
CLIP1-205ENST00000514271 SMAP1Q8IYB5 467 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 MRPL50Q8N5N7 158 aaKnown RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 KDM6AO15550 1401 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 CUL4AQ13619 759 aa9.15□□□□□ -0.94
CLIP1-205ENST00000514271 DZIP1LQ8IYY4 767 aaKnown RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 UPF1Q92900 1129 aaKnown RBP eCLIP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 TEX13AQ9BXU3 409 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 COL5A3P25940 1745 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-205ENST00000514271 RGL2O15211 777 aa9.15□□□□□ -0.95
CLIP1-205ENST00000514271 CYP27B1O15528 508 aa9.15□□□□□ -0.95
CLIP1-205ENST00000514271 TMPOP42166 694 aaKnown RBP9.15□□□□□ -0.95
CLIP1-205ENST00000514271 TMOD3Q9NYL9 352 aa9.15□□□□□ -0.95
CLIP1-205ENST00000514271 TAF1LQ8IZX4 1826 aa9.15□□□□□ -0.95
CLIP1-205ENST00000514271 BAG4O95429 457 aaKnown RBP9.14□□□□□ -0.95
CLIP1-205ENST00000514271 ZKSCAN2Q63HK3 967 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 DDX19BQ9UMR2 479 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 RNMTO43148 476 aaKnown RBP9.14□□□□□ -0.95
CLIP1-205ENST00000514271 CHD1LQ86WJ1 897 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 USP26Q9BXU7 913 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 K7ELQ4 463 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-205ENST00000514271 TBC1D9Q6ZT07 1266 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 TMEM57Q8N5G2 664 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 USHBP1Q8N6Y0 703 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 SLKQ9H2G2 1235 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-205ENST00000514271 C1orf115Q9H7X2 142 aa9.14□□□□□ -0.95
CLIP1-205ENST00000514271 MTHFSDQ2M296 383 aaKnown RBP9.13□□□□□ -0.95
CLIP1-205ENST00000514271 RBSNQ9H1K0 784 aa9.13□□□□□ -0.95
CLIP1-205ENST00000514271 COL24A1Q17RW2 1714 aa9.13□□□□□ -0.95
CLIP1-205ENST00000514271 AEBP1Q8IUX7 1158 aa9.13□□□□□ -0.95
CLIP1-205ENST00000514271 SLC52A2Q9HAB3 445 aa9.13□□□□□ -0.95
CLIP1-205ENST00000514271 CABP4P57796 275 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 FLAD1Q8NFF5 587 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 VAMP4O75379 141 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 HMOX1P09601 288 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 DDX54Q8TDD1 881 aaKnown RBP9.12□□□□□ -0.95
CLIP1-205ENST00000514271 TEFQ10587 303 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 ZSCAN23Q3MJ62 389 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 PLEKHM2Q8IWE5 1019 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 GCC1Q96CN9 775 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 TJP1Q07157 1748 aa9.12□□□□□ -0.95
CLIP1-205ENST00000514271 CTIFO43310 598 aaKnown RBP9.11□□□□□ -0.95
CLIP1-205ENST00000514271 HOXB7P09629 217 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 HSP90AA2PQ14568 343 aaPredicted RBP9.11□□□□□ -0.95
CLIP1-205ENST00000514271 NBPF14Q5TI25 921 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 MYH16Q9H6N6 1097 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 CWC22Q9HCG8 908 aaKnown RBP9.11□□□□□ -0.95
CLIP1-205ENST00000514271 PRDM10Q9NQV6 1147 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 ZKSCAN5Q9Y2L8 839 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 DMTNQ08495 405 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 RC3H1Q5TC82 1133 aaKnown RBP9.11□□□□□ -0.95
CLIP1-205ENST00000514271 ILDR2Q71H61 639 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 ANKRD7Q92527 254 aa9.11□□□□□ -0.95
CLIP1-205ENST00000514271 KCPQ6ZWJ8 1503 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 EPB41L2O43491 1005 aaKnown RBP9.1□□□□□ -0.95
CLIP1-205ENST00000514271 INTS3Q68E01 1043 aaKnown RBP9.1□□□□□ -0.95
CLIP1-205ENST00000514271 DCTPP1Q9H773 170 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 NSFL1CQ9UNZ2 370 aaKnown RBP9.1□□□□□ -0.95
CLIP1-205ENST00000514271 DYNC1I1O14576 645 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 SSFA2P28290 1259 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 NOB1Q9ULX3 412 aaKnown RBP9.1□□□□□ -0.95
CLIP1-205ENST00000514271 C4BP0C0L5 1744 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 PALLDQ8WX93 1383 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 PKP1Q13835 747 aa9.1□□□□□ -0.95
CLIP1-205ENST00000514271 TAF7Q15545 349 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-205ENST00000514271 CERS3Q8IU89 383 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms