RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, human

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM3-209	ENST00000514142	SPECC1L	Q69YQ0	1117 aa		11.96	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CTAGE6	Q86UF2	777 aa		11.96	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CTAGE4	Q8IX94	777 aa		11.96	□□□□□ -0.5
PDLIM3-209	ENST00000514142	PHACTR2	O75167	634 aa		11.96	□□□□□ -0.5
PDLIM3-209	ENST00000514142	USP5	P45974	858 aa		11.96	□□□□□ -0.5
PDLIM3-209	ENST00000514142	OGFR	Q9NZT2	677 aa		11.96	□□□□□ -0.5
PDLIM3-209	ENST00000514142	DHX29	Q7Z478	1369 aa	Known RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	HSF2BP	O75031	334 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	MTIF2	P46199	727 aa	Known RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CABP4	P57796	275 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	RAB3GAP1	Q15042	981 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	VPS36	Q86VN1	386 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ATRIP	Q8WXE1	791 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	NUCB1	Q02818	461 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ZNF692	Q9BU19	519 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TAT	P17735	454 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SDS	P20132	328 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TAF7	Q15545	349 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TTC31	Q49AM3	519 aa	Predicted RBP	11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CEP112	Q8N8E3	955 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	GTF3C6	Q969F1	213 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SNX21	Q969T3	373 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	VPS18	Q9P253	973 aa		11.95	□□□□□ -0.5
PDLIM3-209	ENST00000514142	MACROD2	A1Z1Q3	448 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	PRPF4B	Q13523	1007 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CCDC102B	Q68D86	513 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CEP57	Q86XR8	500 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	AOPEP	Q8N6M6	819 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	MINDY4B	A8MYZ0	360 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	IFIT1	P09914	478 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	DNM1	Q05193	864 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	RAB11FIP4	Q86YS3	637 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TSG101	Q99816	390 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	N4BP3	O15049	544 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SEC24B	O95487	1268 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	FEZ1	Q99689	392 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	U2AF2	P26368	475 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CETN2	P41208	172 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ESCO1	Q5FWF5	840 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ABCF2	Q9UG63	623 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	C9orf84	Q5VXU9	1444 aa		11.94	□□□□□ -0.5
PDLIM3-209	ENST00000514142	PPP1R12B	O60237	982 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TCEANC2	Q96MN5	208 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	USP16	Q9Y5T5	823 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SLC12A7	Q9Y666	1083 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ABCC11	Q96J66	1382 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	MYO1B	O43795	1136 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SYT1	P21579	422 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	UBA5	Q9GZZ9	404 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ORC3	Q9UBD5	711 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	NCOA1	Q15788	1441 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CCDC196	A0A1B0GTZ2	297 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	NOP2	P46087	812 aa	Known RBP	11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	HDAC1	Q13547	482 aa	Predicted RBP	11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	RASSF4	Q9H2L5	321 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	NAIP	Q13075	1403 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	GOLGA8A	A7E2F4	631 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	GNAT3	A8MTJ3	354 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ZNF213	O14771	459 aa		11.93	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TYRO3	Q06418	890 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SYT10	Q6XYQ8	523 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CCDC144CP	Q8IYA2	1237 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	NAPB	Q9H115	298 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	PHAX	Q9H814	394 aa	Known RBP	11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ECHDC1	Q9NTX5	307 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	PRDM2	Q13029	1718 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	EBAG9	O00559	213 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ZNF76	P36508	570 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SSRP1	Q08945	709 aa	Known RBP	11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	EVI5L	Q96CN4	794 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SMC5	Q8IY18	1101 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ZGPAT	Q8N5A5	531 aa	Known RBP	11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	DRC1	Q96MC2	740 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	NEK1	Q96PY6	1258 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	SYK	P43405	635 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	GOLGA1	Q92805	767 aa		11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	11.92	□□□□□ -0.5
PDLIM3-209	ENST00000514142	F13A1	P00488	732 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	METTL24	Q5JXM2	366 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	HYPK	Q9NX55	129 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	AKR1B10	O60218	316 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	LMOD1	P29536	600 aa	Predicted RBP	11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	LARP1	Q6PKG0	1096 aa	Known RBP	11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	FBF1	Q8TES7	1133 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CEP63	Q96MT8	703 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	RBSN	Q9H1K0	784 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	IFIT3	O14879	490 aa	Known RBP	11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	FGFR1OP	O95684	399 aa	Known RBP	11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	TAOK3	Q9H2K8	898 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	CKAP4	Q07065	602 aa	Known RBP	11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	BRF1	Q92994	677 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.91	□□□□□ -0.5
PDLIM3-209	ENST00000514142	DNAJC21	Q5F1R6	531 aa	Known RBP	11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	OTUD6B	Q8N6M0	293 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	EHBP1	Q8NDI1	1231 aa		11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	PUF60	Q9UHX1	559 aa	Known RBP	11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	IARS	P41252	1262 aa	Known RBP	11.9	□□□□□ -0.5
PDLIM3-209	ENST00000514142	HAND2	P61296	217 aa		11.9	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 525 ms