RNA–Protein interactions for RNA: ENST00000513525.1

CCL28-203, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best) BASIC

Gene CCL28, Length 1,518 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-203ENST00000513525 ANP32CO43423 234 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 PRKAR2BP31323 418 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 TEFQ10587 303 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 PARP3Q9Y6F1 533 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 COL15A1P39059 1388 aa13.13□□□□□ -0.31
CCL28-203ENST00000513525 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
CCL28-203ENST00000513525 TTC5Q8N0Z6 440 aa13.12□□□□□ -0.31
CCL28-203ENST00000513525 PHACTR3Q96KR7 559 aa13.12□□□□□ -0.31
CCL28-203ENST00000513525 SRP68Q9UHB9 627 aaKnown RBP13.12□□□□□ -0.31
CCL28-203ENST00000513525 ADCY9O60503 1353 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 FCHSD2O94868 740 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 FKBP8Q14318 412 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 ZNF790Q6PG37 636 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 IFNL1Q8IU54 200 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 ZBTB1Q9Y2K1 713 aa13.11□□□□□ -0.31
CCL28-203ENST00000513525 ANKRD31Q8N7Z5 1873 aa13.1□□□□□ -0.31
CCL28-203ENST00000513525 U2AF1L5P0DN76 240 aaPredicted RBP13.1□□□□□ -0.31
CCL28-203ENST00000513525 U2AF1Q01081 240 aaKnown RBP eCLIP13.1□□□□□ -0.31
CCL28-203ENST00000513525 YTHDC1Q96MU7 727 aaKnown RBP13.1□□□□□ -0.31
CCL28-203ENST00000513525 CCDC88AQ3V6T2 1871 aa13.1□□□□□ -0.31
CCL28-203ENST00000513525 ZPR1O75312 459 aa13.09□□□□□ -0.31
CCL28-203ENST00000513525 TM4SF1P30408 202 aa13.09□□□□□ -0.31
CCL28-203ENST00000513525 ZNF496Q96IT1 587 aaPredicted RBP13.09□□□□□ -0.31
CCL28-203ENST00000513525 NARFQ9UHQ1 456 aa13.09□□□□□ -0.31
CCL28-203ENST00000513525 STARD3NLO95772 234 aa13.08□□□□□ -0.31
CCL28-203ENST00000513525 NUBP1P53384 320 aa13.08□□□□□ -0.31
CCL28-203ENST00000513525 DDR1Q08345 913 aa13.08□□□□□ -0.31
CCL28-203ENST00000513525 USPL1Q5W0Q7 1092 aa13.08□□□□□ -0.31
CCL28-203ENST00000513525 TEX13AQ9BXU3 409 aaPredicted RBP13.08□□□□□ -0.31
CCL28-203ENST00000513525 ATP10DQ9P241 1426 aa13.08□□□□□ -0.31
CCL28-203ENST00000513525 POLRMTO00411 1230 aaKnown RBP13.08□□□□□ -0.32
CCL28-203ENST00000513525 HTATSF1O43719 755 aaKnown RBP13.08□□□□□ -0.32
CCL28-203ENST00000513525 CACNA1SQ13698 1873 aa13.08□□□□□ -0.32
CCL28-203ENST00000513525 FMNL2Q96PY5 1086 aa13.08□□□□□ -0.32
CCL28-203ENST00000513525 ARFGEF2Q9Y6D5 1785 aa13.07□□□□□ -0.32
CCL28-203ENST00000513525 A0A0G2JLW4 131 aa13.07□□□□□ -0.32
CCL28-203ENST00000513525 SNPHO15079 494 aa13.07□□□□□ -0.32
CCL28-203ENST00000513525 DPEP1P16444 411 aa13.07□□□□□ -0.32
CCL28-203ENST00000513525 EIF5P55010 431 aaKnown RBP13.07□□□□□ -0.32
CCL28-203ENST00000513525 TMEM121BQ9BXQ6 578 aaPredicted RBP13.07□□□□□ -0.32
CCL28-203ENST00000513525 WWC3Q9ULE0 1092 aa13.07□□□□□ -0.32
CCL28-203ENST00000513525 BTBD11A6QL63 1104 aa13.06□□□□□ -0.32
CCL28-203ENST00000513525 KCNA3P22001 575 aa13.06□□□□□ -0.32
CCL28-203ENST00000513525 RTF1Q92541 710 aaKnown RBP13.06□□□□□ -0.32
CCL28-203ENST00000513525 BCL2L12Q9HB09 334 aa13.06□□□□□ -0.32
CCL28-203ENST00000513525 COL11A2P13942 1736 aaPredicted RBP13.06□□□□□ -0.32
CCL28-203ENST00000513525 A0A087WZG4 1122 aa13.05□□□□□ -0.32
CCL28-203ENST00000513525 GIGYF1O75420 1035 aaPredicted RBP13.05□□□□□ -0.32
CCL28-203ENST00000513525 CANXP27824 592 aaKnown RBP13.05□□□□□ -0.32
CCL28-203ENST00000513525 C1QTNF8P60827 252 aa13.05□□□□□ -0.32
CCL28-203ENST00000513525 BCS1LQ9Y276 419 aa13.05□□□□□ -0.32
CCL28-203ENST00000513525 NUP98P52948 1817 aa13.05□□□□□ -0.32
CCL28-203ENST00000513525 DICER1Q9UPY3 1922 aaKnown RBP13.05□□□□□ -0.32
CCL28-203ENST00000513525 IL6STP40189 918 aaPredicted RBP13.04□□□□□ -0.32
CCL28-203ENST00000513525 NFIXQ14938 502 aa13.04□□□□□ -0.32
CCL28-203ENST00000513525 IRX5P78411 483 aaPredicted RBP13.03□□□□□ -0.32
CCL28-203ENST00000513525 MCM10Q7L590 875 aa13.03□□□□□ -0.32
CCL28-203ENST00000513525 PIM2Q9P1W9 311 aa13.03□□□□□ -0.32
CCL28-203ENST00000513525 FER1L6Q2WGJ9 1857 aa13.03□□□□□ -0.32
CCL28-203ENST00000513525 KCNQ3O43525 872 aa13.03□□□□□ -0.32
CCL28-203ENST00000513525 PLEKHF1Q96S99 279 aa13.03□□□□□ -0.32
CCL28-203ENST00000513525 SERPINB2P05120 415 aa13.02□□□□□ -0.33
CCL28-203ENST00000513525 NEFMP07197 916 aa13.02□□□□□ -0.33
CCL28-203ENST00000513525 RALBP1Q15311 655 aa13.02□□□□□ -0.33
CCL28-203ENST00000513525 TIAM2Q8IVF5 1701 aa13.01□□□□□ -0.33
CCL28-203ENST00000513525 A1BGP04217 495 aa13.01□□□□□ -0.33
CCL28-203ENST00000513525 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
CCL28-203ENST00000513525 DALRD3Q5D0E6 543 aaKnown RBP13.01□□□□□ -0.33
CCL28-203ENST00000513525 PNNQ9H307 717 aaKnown RBP13.01□□□□□ -0.33
CCL28-203ENST00000513525 OCEL1Q9H607 264 aa13.01□□□□□ -0.33
CCL28-203ENST00000513525 GPBP1L1Q9HC44 474 aaPredicted RBP13.01□□□□□ -0.33
CCL28-203ENST00000513525 TNRC6CQ9HCJ0 1690 aaKnown RBP13.01□□□□□ -0.33
CCL28-203ENST00000513525 SNRPA1P09661 255 aaKnown RBP13□□□□□ -0.33
CCL28-203ENST00000513525 CHRNA5P30532 468 aa13□□□□□ -0.33
CCL28-203ENST00000513525 TAF7Q15545 349 aaPredicted RBP13□□□□□ -0.33
CCL28-203ENST00000513525 EIF2AK3Q9NZJ5 1116 aaKnown RBP13□□□□□ -0.33
CCL28-203ENST00000513525 USP16Q9Y5T5 823 aa13□□□□□ -0.33
CCL28-203ENST00000513525 CARMIL3Q8ND23 1372 aa12.99□□□□□ -0.33
CCL28-203ENST00000513525 TBC1D9BQ66K14 1250 aa12.99□□□□□ -0.33
CCL28-203ENST00000513525 ARHGAP27Q6ZUM4 889 aa12.99□□□□□ -0.33
CCL28-203ENST00000513525 TBC1D2BQ9UPU7 963 aa12.99□□□□□ -0.33
CCL28-203ENST00000513525 PRAMEF22A3QJZ6 481 aa12.98□□□□□ -0.33
CCL28-203ENST00000513525 CAMTA2O94983 1202 aa12.98□□□□□ -0.33
CCL28-203ENST00000513525 NFE2L2Q16236 605 aa12.98□□□□□ -0.33
CCL28-203ENST00000513525 NPM2Q86SE8 214 aaKnown RBP12.98□□□□□ -0.33
CCL28-203ENST00000513525 ZNF330Q9Y3S2 320 aaPredicted RBP12.98□□□□□ -0.33
CCL28-203ENST00000513525 SLX4Q8IY92 1834 aa12.98□□□□□ -0.33
CCL28-203ENST00000513525 MAPK8IP3Q9UPT6 1336 aa12.98□□□□□ -0.33
CCL28-203ENST00000513525 RGL2O15211 777 aa12.98□□□□□ -0.33
CCL28-203ENST00000513525 DZIP3Q86Y13 1208 aaKnown RBP12.98□□□□□ -0.33
CCL28-203ENST00000513525 PNISRQ8TF01 805 aaKnown RBP12.98□□□□□ -0.33
CCL28-203ENST00000513525 BICDL1Q6ZP65 573 aa12.97□□□□□ -0.33
CCL28-203ENST00000513525 PDZRN3Q9UPQ7 1066 aa12.97□□□□□ -0.33
CCL28-203ENST00000513525 ANKRD36CQ5JPF3 1778 aa12.97□□□□□ -0.33
CCL28-203ENST00000513525 MYBBP1AQ9BQG0 1328 aaKnown RBP12.96□□□□□ -0.33
CCL28-203ENST00000513525 SENP3-EIF4A1A0A087X0R7 540 aa12.96□□□□□ -0.33
CCL28-203ENST00000513525 MMRN1Q13201 1228 aa12.96□□□□□ -0.33
CCL28-203ENST00000513525 PRR5LQ6MZQ0 368 aa12.96□□□□□ -0.33
CCL28-203ENST00000513525 CLEC4GQ6UXB4 293 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms