RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 PHF8Q9UPP1 1060 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 RTL1A6NKG5 1358 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 FLT4P35916 1363 aa9.88□□□□□ -0.83
LIMCH1-216ENST00000512820 CCDC66A2RUB6 948 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 GADD45BO75293 160 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 NEK1Q96PY6 1258 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 CEP126Q9P2H0 1117 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 TBC1D2BQ9UPU7 963 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 ANO6Q4KMQ2 910 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 CCDC186Q7Z3E2 898 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 CHAMP1Q96JM3 812 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 HMG20BQ9P0W2 317 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 PA2G4Q9UQ80 394 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 CLASP1Q7Z460 1538 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 HMGB1P09429 215 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 GPT2Q8TD30 523 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 TTC41PQ6P2S7 1318 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 UHRF1BP1LA0JNW5 1464 aa9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 CCT2P78371 535 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-216ENST00000512820 SMTNL1A8MU46 457 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 ATF3P18847 181 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 CEBPAP49715 358 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 TRMT1Q9NXH9 659 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 SPDYE4A6NLX3 237 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 GTF2E1P29083 439 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 ZC3H6P61129 1189 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 CCDC57Q2TAC2 916 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 VPS53Q5VIR6 699 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 FAM177A1Q8N128 213 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 FSIP1Q8NA03 581 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 KIF18AQ8NI77 898 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 POGZQ7Z3K3 1410 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 KIAA0232Q92628 1395 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 SFPQP23246 707 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 TERF1P54274 439 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 SNX14Q9Y5W7 946 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 CBFA2T2O43439 604 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 NEMFO60524 1076 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 TYRO3Q06418 890 aa9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 NMIQ13287 307 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 CCAR1Q8IX12 1150 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-216ENST00000512820 KIF2AO00139 706 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 ALDH1L1O75891 902 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 IPO7O95373 1038 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 CAVIN2O95810 425 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 STX1AQ16623 288 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 SGSM2O43147 1006 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 SART3Q15020 963 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 IMMTQ16891 758 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 RRP12Q5JTH9 1297 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 CREB3L3Q68CJ9 461 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 PALD1Q9ULE6 856 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 PPFIA3O75145 1194 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 PROSER2Q86WR7 435 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 BRF1Q92994 677 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 TNRQ92752 1358 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 ZNF853P0CG23 659 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 C8orf76Q96K31 380 aa9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 ZSCAN16Q9H4T2 348 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 CGNQ9P2M7 1197 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-216ENST00000512820 IFIT1P09914 478 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 KSR2Q6VAB6 950 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 RUFY3Q7L099 469 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 PCMTD1Q96MG8 357 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 CNNM1Q9NRU3 951 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 AOX1Q06278 1338 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 CFAP65Q6ZU64 1925 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 A0A087WZG4 1122 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 GRM8O00222 908 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 XBP1P17861 261 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 HSPA4P34932 840 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 CFAP100Q494V2 611 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 JARID2Q92833 1246 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 SYTL4Q96C24 671 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 RBM33Q96EV2 1170 aaKnown RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 DNAJC25Q9H1X3 360 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 CLTCL1P53675 1640 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 MADDQ8WXG6 1647 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 ZNF500O60304 480 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 CDKL5O76039 1030 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 TTLL5Q6EMB2 1281 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 STK11IPQ8N1F8 1099 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 LRRC2Q9BYS8 371 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 ZHX1Q9UKY1 873 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 MAP3K5Q99683 1374 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 RAD50Q92878 1312 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 PTGS1P23219 599 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 ANKLE2Q86XL3 938 aa9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 CCDC85AQ96PX6 553 aaPredicted RBP9.84□□□□□ -0.83
LIMCH1-216ENST00000512820 GOLIM4O00461 696 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 UBXN4Q92575 508 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 PAXBP1Q9Y5B6 917 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 DTNBO60941 627 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 CEP135Q66GS9 1140 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 CCDC70Q6NSX1 233 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 KIF6Q6ZMV9 814 aa9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 C17orf53Q8N3J3 647 aaPredicted RBP9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 CWF19L2Q2TBE0 894 aaKnown RBP9.83□□□□□ -0.84
LIMCH1-216ENST00000512820 HSP90B2PQ58FF3 399 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms