RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TERF1P54274 439 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 FAM173BQ6P4H8 233 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 PDRG1Q9NUG6 133 aa11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 LRRC59Q96AG4 307 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-215ENST00000512632 IFIT2P09913 472 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 KCNA6P17658 529 aa11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 UBE2HP62256 183 aa11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 COL9A3Q14050 684 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 CWF19L2Q2TBE0 894 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 HYPKQ9NX55 129 aa11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 PLEKHG1Q9ULL1 1385 aa11.1□□□□□ -0.63
LIMCH1-215ENST00000512632 BTBD11A6QL63 1104 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 IL17RAQ96F46 866 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 CCDC8Q9H0W5 538 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 TBX22Q9Y458 520 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 AIMP1Q12904 312 aaKnown RBP11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 PROSER3Q2NL68 480 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 ZNF530Q6P9A1 599 aaPredicted RBP11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 SASS6Q6UVJ0 657 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 ECHDC1Q9NTX5 307 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 HSP90AB4PQ58FF6 505 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 AACSQ86V21 672 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 FAM184AQ8NB25 1140 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 MTMR6Q9Y217 621 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 MAP3K2Q9Y2U5 619 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 CYP46A1Q9Y6A2 500 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 PRAMEF22A3QJZ6 481 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 RUFY2Q8WXA3 655 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 FAM227BQ96M60 508 aa11.09□□□□□ -0.63
LIMCH1-215ENST00000512632 FAM177BA6PVY3 158 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 SIL1Q9H173 461 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 ATP6V1DQ9Y5K8 247 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 RGPD1P0DJD0 1748 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 EPB41L2O43491 1005 aaKnown RBP11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 ME3Q16798 604 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 TMEM87AQ8NBN3 555 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 SPC24Q8NBT2 197 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 BABAM1Q9NWV8 329 aa11.08□□□□□ -0.64
LIMCH1-215ENST00000512632 NOLC1Q14978 699 aaKnown RBP eCLIP11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 UVSSAQ2YD98 709 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 LMOD2Q6P5Q4 547 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 BOLA2Q9H3K6 86 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 RBM8AQ9Y5S9 174 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 DIP2BQ9P265 1576 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 TCHHQ07283 1943 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 LARP1BQ659C4 914 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 KDM4AO75164 1064 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 ZKSCAN1P17029 563 aaPredicted RBP11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 CAMK4Q16566 473 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 ST3GAL1Q11201 340 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 KLHDC4Q8TBB5 520 aa11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 TFIP11Q9UBB9 837 aaKnown RBP11.07□□□□□ -0.64
LIMCH1-215ENST00000512632 AP5Z1O43299 807 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 TPCN1Q9ULQ1 816 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 STK3Q13188 491 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 EAF2Q96CJ1 260 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 PKNOX2Q96KN3 472 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 ZSWIM6Q9HCJ5 1215 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 DBF4Q9UBU7 674 aaPredicted RBP11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 TTC41PQ6P2S7 1318 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 ADCY9O60503 1353 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 DYNC1I1O14576 645 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 VPS53Q5VIR6 699 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 TAF6LQ9Y6J9 622 aa11.06□□□□□ -0.64
LIMCH1-215ENST00000512632 LETM1O95202 739 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 NMIQ13287 307 aaPredicted RBP11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 CREB3L3Q68CJ9 461 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 IP6K1Q92551 441 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 GPATCH3Q96I76 525 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 NECTIN1Q15223 517 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 PIBF1Q8WXW3 757 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 TLR7Q9NYK1 1049 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 PHF8Q9UPP1 1060 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 G3BP1Q13283 466 aaKnown RBP eCLIP11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 TTC6Q86TZ1 520 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 EDC3Q96F86 508 aaKnown RBP11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 CCDC171Q6TFL3 1326 aa11.05□□□□□ -0.64
LIMCH1-215ENST00000512632 SETD1BQ9UPS6 1966 aaKnown RBP11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 SASH1O94885 1247 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 CKAP2LQ8IYA6 745 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 EVI5LQ96CN4 794 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 SUCLG2Q96I99 432 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 ZSCAN31Q96LW9 406 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 PSME1Q06323 249 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 CDC37L1Q7L3B6 337 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 FSD1Q9BTV5 496 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 LIG1P18858 919 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 KSR2Q6VAB6 950 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 SH2B1Q9NRF2 756 aaPredicted RBP11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 FUCA2Q9BTY2 467 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 CEMIPQ8WUJ3 1361 aa11.04□□□□□ -0.64
LIMCH1-215ENST00000512632 A0A0D9SFI3 127 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 PLEKHO1Q53GL0 409 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 C1orf141Q5JVX7 400 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 THEMISQ8N1K5 641 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 MAP7D2Q96T17 732 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 BICC1Q9H694 974 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 ESCO1Q5FWF5 840 aa11.03□□□□□ -0.64
LIMCH1-215ENST00000512632 CCDC9Q9Y3X0 531 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms