RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 TTLL7Q6ZT98 887 aa14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 CNBD1Q8NA66 436 aa14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 RRP7AQ9Y3A4 280 aaKnown RBP14.81□□□□□ -0.04
LIMCH1-214ENST00000512228 NUP98P52948 1817 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 POTECB2RU33 542 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 LMNB1P20700 586 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 RIPK4P57078 832 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 RALBP1Q15311 655 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 OLFM4Q6UX06 510 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 CCDC146Q8IYE0 955 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 C7orf43Q8WVR3 580 aa14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 NIP7Q9Y221 180 aaKnown RBP eCLIP14.8□□□□□ -0.04
LIMCH1-214ENST00000512228 TMPOP42166 694 aaKnown RBP14.79□□□□□ -0.04
LIMCH1-214ENST00000512228 HTRA3P83110 453 aa14.79□□□□□ -0.04
LIMCH1-214ENST00000512228 DNAJC5GQ8N7S2 189 aa14.79□□□□□ -0.04
LIMCH1-214ENST00000512228 LAMB4A4D0S4 1761 aa14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 KLRG2A4D1S0 409 aaPredicted RBP14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 MYL6BP14649 208 aa14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 PDIA6Q15084 440 aa14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 LRP10Q7Z4F1 713 aa14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 NPM2Q86SE8 214 aaKnown RBP14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 SLC51AQ86UW1 340 aa14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 NBPF5PQ86XG9 351 aaPredicted RBP14.78□□□□□ -0.04
LIMCH1-214ENST00000512228 DICER1Q9UPY3 1922 aaKnown RBP14.77□□□□□ -0.04
LIMCH1-214ENST00000512228 ANXA1P04083 346 aa14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 KRT24Q2M2I5 525 aa14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 PROSER3Q2NL68 480 aa14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 STYK1Q6J9G0 422 aa14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 PRPF40BQ6NWY9 871 aaKnown RBP14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 NUTM1Q86Y26 1132 aa14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 PNISRQ8TF01 805 aaKnown RBP14.77□□□□□ -0.05
LIMCH1-214ENST00000512228 GLTPD2A6NH11 291 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 NEFMP07197 916 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 ST5P78524 1137 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 NEUROD2Q15784 382 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 MASTLQ96GX5 879 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 ADAMTS8Q9UP79 889 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 TRIM35Q9UPQ4 493 aa14.76□□□□□ -0.05
LIMCH1-214ENST00000512228 TNRC6CQ9HCJ0 1690 aaKnown RBP14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 UBN2Q6ZU65 1347 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 KDM2BQ8NHM5 1336 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 MAPK8IP3Q9UPT6 1336 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 ERFEQ4G0M1 354 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 SUSD4Q5VX71 490 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 TPTE2Q6XPS3 522 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 RBM46Q8TBY0 533 aaKnown RBP14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 CNKSR1Q969H4 720 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 ZBTB3Q9H5J0 574 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 TIAM2Q8IVF5 1701 aa14.75□□□□□ -0.05
LIMCH1-214ENST00000512228 MAP3K15Q6ZN16 1313 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 MYBBP1AQ9BQG0 1328 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 ERVV-1B6SEH8 477 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 NPHP1O15259 732 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 EIF2S2P20042 333 aaKnown RBP14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 GPTP24298 496 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 C3orf67Q6ZVT6 689 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 NECTIN2Q92692 538 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 TSPYL4Q9UJ04 414 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 PDZRN3Q9UPQ7 1066 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 ZNF652Q9Y2D9 606 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 ARFGEF2Q9Y6D5 1785 aa14.74□□□□□ -0.05
LIMCH1-214ENST00000512228 ABCC12Q96J65 1359 aa14.73□□□□□ -0.05
LIMCH1-214ENST00000512228 ZNF34Q8IZ26 560 aa14.73□□□□□ -0.05
LIMCH1-214ENST00000512228 PNNQ9H307 717 aaKnown RBP14.73□□□□□ -0.05
LIMCH1-214ENST00000512228 RGL2O15211 777 aa14.72□□□□□ -0.05
LIMCH1-214ENST00000512228 NPR1P16066 1061 aa14.72□□□□□ -0.05
LIMCH1-214ENST00000512228 CEP350Q5VT06 3117 aa14.72□□□□□ -0.05
LIMCH1-214ENST00000512228 CHL1O00533 1208 aa14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 DDNO94850 711 aaPredicted RBP14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 APLP1P51693 650 aa14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 CCDC184Q52MB2 194 aa14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 SYNE4Q8N205 404 aa14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 ZNF428Q96B54 188 aa14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 TAOK3Q9H2K8 898 aa14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 PRKRIP1Q9H875 184 aaPredicted RBP14.71□□□□□ -0.05
LIMCH1-214ENST00000512228 LTBP3Q9NS15 1303 aa14.7□□□□□ -0.06
LIMCH1-214ENST00000512228 POTEIP0CG38 1075 aa14.7□□□□□ -0.06
LIMCH1-214ENST00000512228 POTEJP0CG39 1038 aa14.7□□□□□ -0.06
LIMCH1-214ENST00000512228 VEGFAP15692 232 aaPredicted RBP14.7□□□□□ -0.06
LIMCH1-214ENST00000512228 C16orf71Q8IYS4 520 aaPredicted RBP14.7□□□□□ -0.06
LIMCH1-214ENST00000512228 ZNF277Q9NRM2 450 aaPredicted RBP14.7□□□□□ -0.06
LIMCH1-214ENST00000512228 WDR90Q96KV7 1748 aa14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 ZC3H4Q9UPT8 1303 aaKnown RBP14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 FSTL1Q12841 308 aa14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 CRY2Q49AN0 593 aa14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 GIGYF2Q6Y7W6 1299 aaKnown RBP14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 RUNDC1Q96C34 613 aa14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 LAS1LQ9Y4W2 734 aaKnown RBP14.69□□□□□ -0.06
LIMCH1-214ENST00000512228 SNED1Q8TER0 1413 aa14.68□□□□□ -0.06
LIMCH1-214ENST00000512228 NTSR2O95665 410 aa14.68□□□□□ -0.06
LIMCH1-214ENST00000512228 GTF2E1P29083 439 aaPredicted RBP14.68□□□□□ -0.06
LIMCH1-214ENST00000512228 KIF6Q6ZMV9 814 aa14.68□□□□□ -0.06
LIMCH1-214ENST00000512228 COPS6Q7L5N1 327 aa14.68□□□□□ -0.06
LIMCH1-214ENST00000512228 TAF1P21675 1872 aa14.67□□□□□ -0.06
LIMCH1-214ENST00000512228 AIMP1Q12904 312 aaKnown RBP14.67□□□□□ -0.06
LIMCH1-214ENST00000512228 XAGE3Q8WTP9 111 aa14.67□□□□□ -0.06
LIMCH1-214ENST00000512228 BABAM1Q9NWV8 329 aa14.67□□□□□ -0.06
LIMCH1-214ENST00000512228 COL4A5P29400 1685 aa14.67□□□□□ -0.06
LIMCH1-214ENST00000512228 TCERG1O14776 1098 aaKnown RBP14.66□□□□□ -0.06
LIMCH1-214ENST00000512228 HOXA10P31260 410 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms