RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 CFAP53Q96M91 514 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 IRF2BPLQ9H1B7 796 aa11.98□□□□□ -0.49
USP53-207ENST00000510852 CTDP1Q9Y5B0 961 aaPredicted RBP11.98□□□□□ -0.49
USP53-207ENST00000510852 CSB-PGBD3P0DP91 1061 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 BIRC2Q13490 618 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 SDE2Q6IQ49 451 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 LRRC59Q96AG4 307 aaKnown RBP11.97□□□□□ -0.49
USP53-207ENST00000510852 SWAP70Q9UH65 585 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 MAP3K19Q56UN5 1328 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 SLIT3O75094 1523 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 ZNF513Q8N8E2 541 aaPredicted RBP11.97□□□□□ -0.49
USP53-207ENST00000510852 CABLES1Q8TDN4 633 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 PDZRN3Q9UPQ7 1066 aa11.97□□□□□ -0.49
USP53-207ENST00000510852 MED1Q15648 1581 aaPredicted RBP11.96□□□□□ -0.49
USP53-207ENST00000510852 PNPLA6Q8IY17 1366 aa11.96□□□□□ -0.49
USP53-207ENST00000510852 SMYD5Q6GMV2 418 aa11.96□□□□□ -0.49
USP53-207ENST00000510852 NFAT5O94916 1531 aa11.96□□□□□ -0.5
USP53-207ENST00000510852 TCERG1O14776 1098 aaKnown RBP11.96□□□□□ -0.5
USP53-207ENST00000510852 TBX4P57082 545 aa11.96□□□□□ -0.5
USP53-207ENST00000510852 E2F4Q16254 413 aa11.96□□□□□ -0.5
USP53-207ENST00000510852 ICE2Q659A1 982 aa11.96□□□□□ -0.5
USP53-207ENST00000510852 SCYL1Q96KG9 808 aa11.96□□□□□ -0.5
USP53-207ENST00000510852 CALR3Q96L12 384 aaKnown RBP11.96□□□□□ -0.5
USP53-207ENST00000510852 INSRP06213 1382 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 RFX1P22670 979 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 CALD1Q05682 793 aaKnown RBP11.95□□□□□ -0.5
USP53-207ENST00000510852 MTA1Q13330 715 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 HSP90AB3PQ58FF7 597 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 ANKRD23Q86SG2 305 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 PARP9Q8IXQ6 854 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 AMPHP49418 695 aa11.95□□□□□ -0.5
USP53-207ENST00000510852 MAP2P11137 1827 aaKnown RBP11.95□□□□□ -0.5
USP53-207ENST00000510852 COL3A1P02461 1466 aaPredicted RBP11.94□□□□□ -0.5
USP53-207ENST00000510852 CDK12Q9NYV4 1490 aaPredicted RBP11.94□□□□□ -0.5
USP53-207ENST00000510852 WDR43Q15061 677 aaKnown RBP eCLIP11.94□□□□□ -0.5
USP53-207ENST00000510852 ARHGEF25Q86VW2 580 aa11.94□□□□□ -0.5
USP53-207ENST00000510852 C1orf131Q8NDD1 294 aaKnown RBP11.94□□□□□ -0.5
USP53-207ENST00000510852 ZCRB1Q8TBF4 217 aaKnown RBP11.94□□□□□ -0.5
USP53-207ENST00000510852 DIAPH1O60610 1272 aaKnown RBP11.94□□□□□ -0.5
USP53-207ENST00000510852 PHLPP1O60346 1717 aa11.93□□□□□ -0.5
USP53-207ENST00000510852 COL16A1Q07092 1604 aaPredicted RBP11.93□□□□□ -0.5
USP53-207ENST00000510852 FLT4P35916 1363 aa11.93□□□□□ -0.5
USP53-207ENST00000510852 TTC30BQ8N4P2 665 aa11.93□□□□□ -0.5
USP53-207ENST00000510852 CEP126Q9P2H0 1117 aa11.93□□□□□ -0.5
USP53-207ENST00000510852 NOP58Q9Y2X3 529 aaKnown RBP11.93□□□□□ -0.5
USP53-207ENST00000510852 PEAK1Q9H792 1746 aa11.93□□□□□ -0.5
USP53-207ENST00000510852 KIF24Q5T7B8 1368 aa11.93□□□□□ -0.5
USP53-207ENST00000510852 RECKO95980 971 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 HOXC9P31274 260 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 TCEAL1Q15170 157 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 PCMTD1Q96MG8 357 aaPredicted RBP11.92□□□□□ -0.5
USP53-207ENST00000510852 TMEM51Q9NW97 253 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 ADAMTS8Q9UP79 889 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 NPAS4Q8IUM7 802 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 VRTNQ9H8Y1 702 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 PUF60Q9UHX1 559 aaKnown RBP11.92□□□□□ -0.5
USP53-207ENST00000510852 RTL1A6NKG5 1358 aa11.92□□□□□ -0.5
USP53-207ENST00000510852 IL13P35225 146 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 IP6K1Q92551 441 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 INO80BQ9C086 356 aaPredicted RBP11.91□□□□□ -0.5
USP53-207ENST00000510852 PIF1Q9H611 641 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 NUDCQ9Y266 331 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 PHRF1Q9P1Y6 1649 aaKnown RBP11.91□□□□□ -0.5
USP53-207ENST00000510852 CCDC144BQ3MJ40 725 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 KLF15Q9UIH9 416 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 CRYBG1Q9Y4K1 1723 aa11.91□□□□□ -0.5
USP53-207ENST00000510852 EIF4A2Q14240 407 aaKnown RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 PLEKHG6Q3KR16 790 aa11.9□□□□□ -0.5
USP53-207ENST00000510852 CCAR1Q8IX12 1150 aaKnown RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 QTRT2Q9H974 415 aaKnown RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 PDE6BP35913 854 aa11.9□□□□□ -0.5
USP53-207ENST00000510852 POU5F1Q01860 360 aaKnown RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 HSP90AA2PQ14568 343 aaPredicted RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 PROCA1Q8NCQ7 364 aaPredicted RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 BSDC1Q9NW68 430 aaPredicted RBP11.9□□□□□ -0.5
USP53-207ENST00000510852 CPDO75976 1380 aa11.9□□□□□ -0.51
USP53-207ENST00000510852 KIAA0232Q92628 1395 aa11.9□□□□□ -0.51
USP53-207ENST00000510852 SHPRHQ149N8 1683 aa11.89□□□□□ -0.51
USP53-207ENST00000510852 U2AF1L5P0DN76 240 aaPredicted RBP11.89□□□□□ -0.51
USP53-207ENST00000510852 U2AF1Q01081 240 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP53-207ENST00000510852 NBPF6Q5VWK0 638 aa11.89□□□□□ -0.51
USP53-207ENST00000510852 NBPF5PQ86XG9 351 aaPredicted RBP11.89□□□□□ -0.51
USP53-207ENST00000510852 NBPF4Q96M43 638 aa11.89□□□□□ -0.51
USP53-207ENST00000510852 RYDENQ9NUL5 291 aaKnown RBP11.89□□□□□ -0.51
USP53-207ENST00000510852 GNEQ9Y223 722 aaKnown RBP11.89□□□□□ -0.51
USP53-207ENST00000510852 LTN1O94822 1766 aa11.89□□□□□ -0.51
USP53-207ENST00000510852 CT47B1P0C2W7 299 aaPredicted RBP11.88□□□□□ -0.51
USP53-207ENST00000510852 HSPA1LP34931 641 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 NEXNQ0ZGT2 675 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 CHRNA2Q15822 529 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 GLMNQ92990 594 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 AXIN2Q9Y2T1 843 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 FAM200BP0CF97 657 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 NBPF10Q6P3W6 841 aaKnown RBP11.88□□□□□ -0.51
USP53-207ENST00000510852 ENOX1Q8TC92 643 aaKnown RBP11.88□□□□□ -0.51
USP53-207ENST00000510852 LTV1Q96GA3 475 aaPredicted RBP11.88□□□□□ -0.51
USP53-207ENST00000510852 PAGR1Q9BTK6 254 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
USP53-207ENST00000510852 COL22A1Q8NFW1 1626 aaPredicted RBP11.88□□□□□ -0.51
USP53-207ENST00000510852 POM121CA8CG34 1229 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms