RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 GJD3Q8N144 294 aa6.53□□□□□ -1.36
USP53-204ENST00000507906 SNIP1Q8TAD8 396 aaKnown RBP6.53□□□□□ -1.36
USP53-204ENST00000507906 IFT43Q96FT9 208 aa6.53□□□□□ -1.36
USP53-204ENST00000507906 DUSP9Q99956 384 aaKnown RBP6.53□□□□□ -1.36
USP53-204ENST00000507906 PHACTR1Q9C0D0 580 aa6.53□□□□□ -1.36
USP53-204ENST00000507906 NIF3L1Q9GZT8 377 aa6.53□□□□□ -1.36
USP53-204ENST00000507906 TOR4AQ9NXH8 423 aa6.53□□□□□ -1.36
USP53-204ENST00000507906 WASF2Q9Y6W5 498 aa6.53□□□□□ -1.36
USP53-204ENST00000507906 LDHBP07195 334 aaKnown RBP6.52□□□□□ -1.37
USP53-204ENST00000507906 SMPD1P17405 629 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 BRD2P25440 801 aaKnown RBP6.52□□□□□ -1.37
USP53-204ENST00000507906 MAPK8P45983 427 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 DNM1Q05193 864 aaKnown RBP6.52□□□□□ -1.37
USP53-204ENST00000507906 RTN1Q16799 776 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 C11orf91Q3C1V1 193 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 C9orf131Q5VYM1 1079 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 ALKBH2Q6NS38 261 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 EDEM1Q92611 657 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 CITED4Q96RK1 184 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 CFHR5Q9BXR6 569 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 GRIP2Q9C0E4 1043 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 GGNBP2Q9H3C7 697 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 PARP2Q9UGN5 583 aa6.52□□□□□ -1.37
USP53-204ENST00000507906 A6NHS1 94 aa6.51□□□□□ -1.37
USP53-204ENST00000507906 AXIN1O15169 862 aa6.51□□□□□ -1.37
USP53-204ENST00000507906 PDGFAP04085 211 aa6.51□□□□□ -1.37
USP53-204ENST00000507906 ZAP70P43403 619 aa6.51□□□□□ -1.37
USP53-204ENST00000507906 ZSCAN10Q96SZ4 725 aaPredicted RBP6.51□□□□□ -1.37
USP53-204ENST00000507906 USP35Q9P2H5 1018 aa6.51□□□□□ -1.37
USP53-204ENST00000507906 OPLAHO14841 1288 aa6.5□□□□□ -1.37
USP53-204ENST00000507906 MZF1P28698 734 aaPredicted RBP6.5□□□□□ -1.37
USP53-204ENST00000507906 HDLBPQ00341 1268 aaKnown RBP6.5□□□□□ -1.37
USP53-204ENST00000507906 C4orf17Q53FE4 359 aa6.5□□□□□ -1.37
USP53-204ENST00000507906 HPS1Q92902 700 aa6.5□□□□□ -1.37
USP53-204ENST00000507906 TRIM52Q96A61 297 aa6.5□□□□□ -1.37
USP53-204ENST00000507906 DMRTB1Q96MA1 342 aa6.5□□□□□ -1.37
USP53-204ENST00000507906 NLRP3Q96P20 1036 aa6.5□□□□□ -1.37
USP53-204ENST00000507906 INSM2Q96T92 566 aaPredicted RBP6.5□□□□□ -1.37
USP53-204ENST00000507906 NIFKQ9BYG3 293 aaKnown RBP6.5□□□□□ -1.37
USP53-204ENST00000507906 C11orf95C9JLR9 678 aaPredicted RBP6.49□□□□□ -1.37
USP53-204ENST00000507906 PRPF40AO75400 957 aaKnown RBP6.49□□□□□ -1.37
USP53-204ENST00000507906 ORC1Q13415 861 aa6.49□□□□□ -1.37
USP53-204ENST00000507906 ENOX2Q16206 610 aaKnown RBP6.49□□□□□ -1.37
USP53-204ENST00000507906 TREML1Q86YW5 311 aa6.49□□□□□ -1.37
USP53-204ENST00000507906 ABTB2Q8N961 1025 aa6.49□□□□□ -1.37
USP53-204ENST00000507906 ZNF280CQ8ND82 737 aa6.49□□□□□ -1.37
USP53-204ENST00000507906 GPR152Q8TDT2 470 aa6.49□□□□□ -1.37
USP53-204ENST00000507906 ALKBH8Q96BT7 664 aaKnown RBP6.49□□□□□ -1.37
USP53-204ENST00000507906 DMGDHQ9UI17 866 aaKnown RBP6.49□□□□□ -1.37
USP53-204ENST00000507906 USP20Q9Y2K6 914 aa6.49□□□□□ -1.37
USP53-204ENST00000507906 CTSOP43234 321 aaPredicted RBP6.48□□□□□ -1.37
USP53-204ENST00000507906 C1orf53Q5VUE5 145 aa6.48□□□□□ -1.37
USP53-204ENST00000507906 TMEM214Q6NUQ4 689 aaKnown RBP6.48□□□□□ -1.37
USP53-204ENST00000507906 MEIOBQ8N635 442 aa6.48□□□□□ -1.37
USP53-204ENST00000507906 NBPF15Q8N660 670 aa6.48□□□□□ -1.37
USP53-204ENST00000507906 RHBDD1Q8TEB9 315 aa6.48□□□□□ -1.37
USP53-204ENST00000507906 CHMP3Q9Y3E7 222 aa6.48□□□□□ -1.37
USP53-204ENST00000507906 PNMA6FA0A0J9YX94 578 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 MICAL2O94851 1124 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 PHKA2P46019 1235 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 PLA2G4AP47712 749 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 RNF144AP50876 292 aaPredicted RBP6.47□□□□□ -1.37
USP53-204ENST00000507906 DAB2P98082 770 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 RAD51AP2Q09MP3 1159 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 TMC4Q7Z404 712 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 METTL16Q86W50 562 aaKnown RBP6.47□□□□□ -1.37
USP53-204ENST00000507906 NUDT16Q96DE0 195 aaKnown RBP6.47□□□□□ -1.37
USP53-204ENST00000507906 HSH2DQ96JZ2 352 aa6.47□□□□□ -1.37
USP53-204ENST00000507906 AVPP01185 164 aa6.46□□□□□ -1.38
USP53-204ENST00000507906 PDE3BQ13370 1112 aa6.46□□□□□ -1.38
USP53-204ENST00000507906 TREML4Q6UXN2 200 aa6.46□□□□□ -1.38
USP53-204ENST00000507906 SPINT1O43278 529 aa6.45□□□□□ -1.38
USP53-204ENST00000507906 SNRPBP14678 240 aaKnown RBP6.45□□□□□ -1.38
USP53-204ENST00000507906 GRNP28799 593 aaKnown RBP6.45□□□□□ -1.38
USP53-204ENST00000507906 POU4F2Q12837 409 aa6.45□□□□□ -1.38
USP53-204ENST00000507906 SLC27A3Q5K4L6 730 aa6.45□□□□□ -1.38
USP53-204ENST00000507906 USPL1Q5W0Q7 1092 aa6.45□□□□□ -1.38
USP53-204ENST00000507906 AIDAQ96BJ3 306 aa6.45□□□□□ -1.38
USP53-204ENST00000507906 SUSD3Q96L08 255 aa6.45□□□□□ -1.38
USP53-204ENST00000507906 EIF1AYO14602 144 aaKnown RBP6.44□□□□□ -1.38
USP53-204ENST00000507906 SCAMP3O14828 347 aaKnown RBP6.44□□□□□ -1.38
USP53-204ENST00000507906 CTSHP09668 335 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 ATP4AP20648 1035 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 XPCQ01831 940 aaPredicted RBP6.44□□□□□ -1.38
USP53-204ENST00000507906 C8orf34Q49A92 452 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 CRIPAKQ8N1N5 446 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 C8orf37Q96NL8 207 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 CSRNP1Q96S65 589 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 ATP13A2Q9NQ11 1180 aa6.44□□□□□ -1.38
USP53-204ENST00000507906 SHROOM4Q9ULL8 1493 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 SPATA31C2B4DYI2 1134 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 WFS1O76024 890 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 INPP5BP32019 993 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 GPC1P35052 558 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 PSMD2Q13200 908 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 TRIP4Q15650 581 aaPredicted RBP6.43□□□□□ -1.38
USP53-204ENST00000507906 GNASQ5JWF2 1037 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 LCE2AQ5TA79 106 aaPredicted RBP6.43□□□□□ -1.38
USP53-204ENST00000507906 PI16Q6UXB8 463 aa6.43□□□□□ -1.38
USP53-204ENST00000507906 PRICKLE2Q7Z3G6 844 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms