RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 IL1RAPL2Q9NP60 686 aa21.16■□□□□ 0.98
NUP54-205ENST00000507257 FOXO3O43524 673 aa21.15■□□□□ 0.98
NUP54-205ENST00000507257 CASTP20810 708 aaKnown RBP21.15■□□□□ 0.98
NUP54-205ENST00000507257 NUTM1Q86Y26 1132 aa21.15■□□□□ 0.98
NUP54-205ENST00000507257 OGFRQ9NZT2 677 aa21.15■□□□□ 0.98
NUP54-205ENST00000507257 GLRX3O76003 335 aaKnown RBP21.14■□□□□ 0.98
NUP54-205ENST00000507257 KRT85P78386 507 aa21.14■□□□□ 0.98
NUP54-205ENST00000507257 NUP62CLQ9H1M0 184 aa21.14■□□□□ 0.98
NUP54-205ENST00000507257 PDRG1Q9NUG6 133 aa21.14■□□□□ 0.98
NUP54-205ENST00000507257 MRVI1Q9Y6F6 885 aa21.14■□□□□ 0.98
NUP54-205ENST00000507257 LARGE1O95461 756 aa21.14■□□□□ 0.97
NUP54-205ENST00000507257 PPP1R42Q7Z4L9 355 aa21.14■□□□□ 0.97
NUP54-205ENST00000507257 TTC21AQ8NDW8 1320 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 SURF6O75683 361 aaKnown RBP21.13■□□□□ 0.97
NUP54-205ENST00000507257 PDCP20941 246 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 PLCB2Q00722 1185 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 TYRO3Q06418 890 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 CCDC83Q8IWF9 413 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 PAXBP1Q9Y5B6 917 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 CYP46A1Q9Y6A2 500 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 ACEP12821 1306 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 PTPRUQ92729 1446 aa21.13■□□□□ 0.97
NUP54-205ENST00000507257 CAVIN2O95810 425 aa21.12■□□□□ 0.97
NUP54-205ENST00000507257 TAF3Q5VWG9 929 aa21.12■□□□□ 0.97
NUP54-205ENST00000507257 PLA2G4DQ86XP0 818 aa21.12■□□□□ 0.97
NUP54-205ENST00000507257 DDX19AQ9NUU7 478 aaKnown RBP21.12■□□□□ 0.97
NUP54-205ENST00000507257 CEP170BQ9Y4F5 1589 aaPredicted RBP21.12■□□□□ 0.97
NUP54-205ENST00000507257 ZBTB7CA1YPR0 619 aa21.12■□□□□ 0.97
NUP54-205ENST00000507257 NCBP1Q09161 790 aaKnown RBP21.12■□□□□ 0.97
NUP54-205ENST00000507257 SPC24Q8NBT2 197 aa21.12■□□□□ 0.97
NUP54-205ENST00000507257 TDRD7Q8NHU6 1098 aaKnown RBP21.12■□□□□ 0.97
NUP54-205ENST00000507257 PTGS1P23219 599 aa21.11■□□□□ 0.97
NUP54-205ENST00000507257 CDC25BP30305 580 aa21.11■□□□□ 0.97
NUP54-205ENST00000507257 GABPB1Q06547 395 aaPredicted RBP21.11■□□□□ 0.97
NUP54-205ENST00000507257 ST3GAL1Q11201 340 aa21.11■□□□□ 0.97
NUP54-205ENST00000507257 TTC6Q86TZ1 520 aa21.11■□□□□ 0.97
NUP54-205ENST00000507257 ALDH8A1Q9H2A2 487 aaPredicted RBP21.11■□□□□ 0.97
NUP54-205ENST00000507257 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.1■□□□□ 0.97
NUP54-205ENST00000507257 FAM177BA6PVY3 158 aa21.1■□□□□ 0.97
NUP54-205ENST00000507257 SCAND2PQ9GZW5 306 aaPredicted RBP21.1■□□□□ 0.97
NUP54-205ENST00000507257 CGNQ9P2M7 1197 aaKnown RBP21.1■□□□□ 0.97
NUP54-205ENST00000507257 GNAT3A8MTJ3 354 aa21.1■□□□□ 0.97
NUP54-205ENST00000507257 U2AF2P26368 475 aaKnown RBP eCLIP21.1■□□□□ 0.975e-7■□□□□ 8.9
NUP54-205ENST00000507257 HDGFP51858 240 aaKnown RBP21.1■□□□□ 0.97
NUP54-205ENST00000507257 NECTIN1Q15223 517 aa21.1■□□□□ 0.97
NUP54-205ENST00000507257 NPHP3Q7Z494 1330 aa21.09■□□□□ 0.97
NUP54-205ENST00000507257 CWC27Q6UX04 472 aaKnown RBP21.09■□□□□ 0.97
NUP54-205ENST00000507257 JAKMIP1Q96N16 626 aaKnown RBP21.09■□□□□ 0.97
NUP54-205ENST00000507257 SNRKQ9NRH2 765 aa21.09■□□□□ 0.97
NUP54-205ENST00000507257 CTNNA3Q9UI47 895 aa21.09■□□□□ 0.97
NUP54-205ENST00000507257 ZNF75DP51815 510 aa21.08■□□□□ 0.97
NUP54-205ENST00000507257 CHMP4AQ9BY43 222 aa21.08■□□□□ 0.97
NUP54-205ENST00000507257 MTX1Q13505 466 aa21.08■□□□□ 0.96
NUP54-205ENST00000507257 ME3Q16798 604 aa21.08■□□□□ 0.96
NUP54-205ENST00000507257 CBX8Q9HC52 389 aa21.08■□□□□ 0.96
NUP54-205ENST00000507257 SPG7Q9UQ90 795 aa21.08■□□□□ 0.96
NUP54-205ENST00000507257 VPS37CA5D8V6 355 aaPredicted RBP21.07■□□□□ 0.96
NUP54-205ENST00000507257 MAP4K4O95819 1239 aaPredicted RBP21.07■□□□□ 0.96
NUP54-205ENST00000507257 ZKSCAN1P17029 563 aaPredicted RBP21.07■□□□□ 0.96
NUP54-205ENST00000507257 LARP1BQ659C4 914 aaKnown RBP21.07■□□□□ 0.96
NUP54-205ENST00000507257 ZSCAN25Q6NSZ9 544 aa21.07■□□□□ 0.96
NUP54-205ENST00000507257 CCDC186Q7Z3E2 898 aa21.07■□□□□ 0.96
NUP54-205ENST00000507257 EYA1Q99502 592 aa21.07■□□□□ 0.96
NUP54-205ENST00000507257 CLSTN2Q9H4D0 955 aa21.07■□□□□ 0.96
NUP54-205ENST00000507257 SRGAP3O43295 1099 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 LIG1P18858 919 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 ANKRD1Q15327 319 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 TAF7Q15545 349 aaPredicted RBP21.06■□□□□ 0.96
NUP54-205ENST00000507257 TNMDQ9H2S6 317 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 DIP2AQ14689 1571 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 ROBO2Q9HCK4 1378 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 SPDYE4A6NLX3 237 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 NEMFO60524 1076 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 GIGYF1O75420 1035 aaPredicted RBP21.06■□□□□ 0.96
NUP54-205ENST00000507257 PSMA5P28066 241 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 ADCK5Q3MIX3 580 aa21.06■□□□□ 0.96
NUP54-205ENST00000507257 DDX41Q9UJV9 622 aaKnown RBP21.06■□□□□ 0.96
NUP54-205ENST00000507257 HIP1O00291 1037 aa21.05■□□□□ 0.96
NUP54-205ENST00000507257 HOXB7P09629 217 aa21.05■□□□□ 0.96
NUP54-205ENST00000507257 PTH1RQ03431 593 aa21.05■□□□□ 0.96
NUP54-205ENST00000507257 LUZP1Q86V48 1076 aa21.05■□□□□ 0.96
NUP54-205ENST00000507257 TNNT1P13805 278 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 PRPF40BQ6NWY9 871 aaKnown RBP21.04■□□□□ 0.96
NUP54-205ENST00000507257 SARM1Q6SZW1 724 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 LARP6Q9BRS8 491 aaKnown RBP21.04■□□□□ 0.96
NUP54-205ENST00000507257 MORC2Q9Y6X9 1032 aaPredicted RBP21.04■□□□□ 0.96
NUP54-205ENST00000507257 NWD1Q149M9 1564 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 CPA1P15085 419 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 ANO6Q4KMQ2 910 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 EVI5LQ96CN4 794 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 GPATCH3Q96I76 525 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 ECHDC1Q9NTX5 307 aa21.04■□□□□ 0.96
NUP54-205ENST00000507257 DACT1Q9NYF0 836 aa21.03■□□□□ 0.96
NUP54-205ENST00000507257 PODXL2Q9NZ53 605 aa21.03■□□□□ 0.96
NUP54-205ENST00000507257 TPCN1Q9ULQ1 816 aa21.03■□□□□ 0.96
NUP54-205ENST00000507257 MED1Q15648 1581 aaPredicted RBP21.03■□□□□ 0.96
NUP54-205ENST00000507257 USP54Q70EL1 1684 aa21.03■□□□□ 0.96
NUP54-205ENST00000507257 HDGFL1Q5TGJ6 251 aa21.02■□□□□ 0.96
NUP54-205ENST00000507257 CDC37L1Q7L3B6 337 aa21.02■□□□□ 0.96
NUP54-205ENST00000507257 CLASRPQ8N2M8 674 aaKnown RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms