RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 TSPYL4Q9UJ04 414 aa20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 AKAP12Q02952 1782 aa20.33■□□□□ 0.85
SQSTM1-211ENST00000506690 CPA1P15085 419 aa20.33■□□□□ 0.84
SQSTM1-211ENST00000506690 FLIIQ13045 1269 aa20.33■□□□□ 0.84
SQSTM1-211ENST00000506690 SETD1AO15047 1707 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 CCDC171Q6TFL3 1326 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 ST3GAL1Q11201 340 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 ANO6Q4KMQ2 910 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 RBM43Q6ZSC3 357 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 TDRD7Q8NHU6 1098 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 SSH3Q8TE77 659 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 FAM208AQ9UK61 1670 aaKnown RBP20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 RAB11FIP3O75154 756 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 KRT85P78386 507 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 CAMK4Q16566 473 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 DRC7Q8IY82 874 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 STK31Q9BXU1 1019 aa20.32■□□□□ 0.84
SQSTM1-211ENST00000506690 VPS37CA5D8V6 355 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-211ENST00000506690 TERF2Q15554 542 aa20.31■□□□□ 0.84
SQSTM1-211ENST00000506690 ITSN1Q15811 1721 aa20.31■□□□□ 0.84
SQSTM1-211ENST00000506690 CNTROBQ8N137 903 aa20.31■□□□□ 0.84
SQSTM1-211ENST00000506690 TRIM5Q9C035 493 aa20.31■□□□□ 0.84
SQSTM1-211ENST00000506690 TTC21AQ8NDW8 1320 aa20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 PDIA4P13667 645 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 CACTINQ8WUQ7 758 aaKnown RBP20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 TM6SF1Q9BZW5 370 aa20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 TNMDQ9H2S6 317 aa20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 PDRG1Q9NUG6 133 aa20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 FAM53CQ9NYF3 392 aa20.3■□□□□ 0.84
SQSTM1-211ENST00000506690 USP44Q9H0E7 712 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 ZSWIM6Q9HCJ5 1215 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 SPG7Q9UQ90 795 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 TNRQ92752 1358 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 TPD52L1Q16890 204 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 KRT222Q8N1A0 295 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 KCNB2Q92953 911 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 NUDT16Q96DE0 195 aaKnown RBP20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 CACNA1FO60840 1977 aa20.29■□□□□ 0.84
SQSTM1-211ENST00000506690 DTNBO60941 627 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 CWC27Q6UX04 472 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 CKAP2LQ8IYA6 745 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 DACT1Q9NYF0 836 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 PXDNLA1KZ92 1463 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 CHD2O14647 1828 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 CDC25BP30305 580 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 HDGFP51858 240 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 ME3Q16798 604 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 ADCK5Q3MIX3 580 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 CEP135Q66GS9 1140 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 ZNF397Q8NF99 534 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 DDX19AQ9NUU7 478 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 CHMP3Q9Y3E7 222 aa20.28■□□□□ 0.84
SQSTM1-211ENST00000506690 RHPN1Q8TCX5 695 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 CCDC61Q9Y6R9 512 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 POLA2Q14181 598 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 CCDC144BQ3MJ40 725 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 KMT5BQ4FZB7 885 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 CCDC144CPQ8IYA2 1237 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 JAKMIP1Q96N16 626 aaKnown RBP20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 CLIP2Q9UDT6 1046 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 CYP46A1Q9Y6A2 500 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 NCKAP5LQ9HCH0 1330 aa20.27■□□□□ 0.84
SQSTM1-211ENST00000506690 PEAK1Q9H792 1746 aa20.27■□□□□ 0.83
SQSTM1-211ENST00000506690 FOXO3O43524 673 aa20.26■□□□□ 0.83
SQSTM1-211ENST00000506690 CCDC30Q5VVM6 783 aa20.26■□□□□ 0.83
SQSTM1-211ENST00000506690 LARP1BQ659C4 914 aaKnown RBP20.26■□□□□ 0.83
SQSTM1-211ENST00000506690 CLSTN2Q9H4D0 955 aa20.26■□□□□ 0.83
SQSTM1-211ENST00000506690 UBTFL1P0CB47 393 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-211ENST00000506690 CDC37L1Q7L3B6 337 aa20.26■□□□□ 0.83
SQSTM1-211ENST00000506690 SURF6O75683 361 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 CEBPAP49715 358 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 RBM6P78332 1123 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 PLPPR3Q6T4P5 718 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 SCAND2PQ9GZW5 306 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 NPHP3Q7Z494 1330 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 ZNF165P49910 485 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 PTH1RQ03431 593 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 MTHFSDQ2M296 383 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 NYAP1Q6ZVC0 841 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 USP42Q9H9J4 1324 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 MAP3K5Q99683 1374 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 ADGRL3Q9HAR2 1447 aa20.25■□□□□ 0.83
SQSTM1-211ENST00000506690 CCDC66A2RUB6 948 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 HSP90AB2PQ58FF8 381 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 FAM173BQ6P4H8 233 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 PPP1R42Q7Z4L9 355 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 NECAB1Q8N987 351 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 KIF1BPQ96EK5 621 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 LRRC8AQ8IWT6 810 aa20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 ZNF215Q9UL58 517 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-211ENST00000506690 PRPF40BQ6NWY9 871 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 FERMT3Q86UX7 667 aa20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 TPCN1Q9ULQ1 816 aa20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 NEMFO60524 1076 aa20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 CAVIN2O95810 425 aa20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 PDCP20941 246 aa20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 SLFNL1Q499Z3 407 aa20.23■□□□□ 0.83
SQSTM1-211ENST00000506690 TTC21BQ7Z4L5 1316 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 FAM193AP78312 1265 aa20.22■□□□□ 0.83
SQSTM1-211ENST00000506690 NECTIN1Q15223 517 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms