RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 CLEC4GQ6UXB4 293 aa15.76■□□□□ 0.11
MED28-203ENST00000503945 ZNF622Q969S3 477 aaKnown RBP eCLIP15.76■□□□□ 0.11
MED28-203ENST00000503945 ZNF219Q9P2Y4 722 aaPredicted RBP15.76■□□□□ 0.11
MED28-203ENST00000503945 PDZRN3Q9UPQ7 1066 aa15.76■□□□□ 0.11
MED28-203ENST00000503945 SIPA1L3O60292 1781 aaPredicted RBP15.75■□□□□ 0.11
MED28-203ENST00000503945 POTECB2RU33 542 aa15.75■□□□□ 0.11
MED28-203ENST00000503945 CAMTA2O94983 1202 aa15.75■□□□□ 0.11
MED28-203ENST00000503945 PIP4K2AP48426 406 aaPredicted RBP15.75■□□□□ 0.11
MED28-203ENST00000503945 BRIP1Q9BX63 1249 aa15.75■□□□□ 0.11
MED28-203ENST00000503945 ZNF652Q9Y2D9 606 aa15.75■□□□□ 0.11
MED28-203ENST00000503945 C21orf2O43822 256 aa15.74■□□□□ 0.11
MED28-203ENST00000503945 COL13A1Q5TAT6 717 aaPredicted RBP15.74■□□□□ 0.11
MED28-203ENST00000503945 DICER1Q9UPY3 1922 aaKnown RBP15.74■□□□□ 0.11
MED28-203ENST00000503945 MYBBP1AQ9BQG0 1328 aaKnown RBP15.73■□□□□ 0.11
MED28-203ENST00000503945 PRR5LQ6MZQ0 368 aa15.73■□□□□ 0.11
MED28-203ENST00000503945 THUMPD2Q9BTF0 503 aaKnown RBP15.73■□□□□ 0.11
MED28-203ENST00000503945 FER1L6Q2WGJ9 1857 aa15.72■□□□□ 0.11
MED28-203ENST00000503945 TIAM2Q8IVF5 1701 aa15.72■□□□□ 0.11
MED28-203ENST00000503945 NBPF26B4DH59 902 aa15.72■□□□□ 0.11
MED28-203ENST00000503945 EIF4A1P60842 406 aaKnown RBP15.72■□□□□ 0.11
MED28-203ENST00000503945 ST5P78524 1137 aa15.72■□□□□ 0.11
MED28-203ENST00000503945 NBPF10Q6P3W6 841 aaKnown RBP15.72■□□□□ 0.11
MED28-203ENST00000503945 TPTE2Q6XPS3 522 aa15.72■□□□□ 0.11
MED28-203ENST00000503945 NBPF15Q8N660 670 aa15.72■□□□□ 0.11
MED28-203ENST00000503945 SLX4Q8IY92 1834 aa15.71■□□□□ 0.11
MED28-203ENST00000503945 LMOD3Q0VAK6 560 aa15.71■□□□□ 0.11
MED28-203ENST00000503945 WDR43Q15061 677 aaKnown RBP eCLIP15.71■□□□□ 0.11
MED28-203ENST00000503945 DPY19L2Q6NUT2 758 aa15.71■□□□□ 0.11
MED28-203ENST00000503945 NBPF5PQ86XG9 351 aaPredicted RBP15.71■□□□□ 0.11
MED28-203ENST00000503945 NGEFQ8N5V2 710 aa15.71■□□□□ 0.11
MED28-203ENST00000503945 CNBD1Q8NA66 436 aa15.71■□□□□ 0.11
MED28-203ENST00000503945 RRP7AQ9Y3A4 280 aaKnown RBP15.71■□□□□ 0.11
MED28-203ENST00000503945 CACNA1SQ13698 1873 aa15.7■□□□□ 0.1
MED28-203ENST00000503945 RGL2O15211 777 aa15.7■□□□□ 0.1
MED28-203ENST00000503945 TMPOP42166 694 aaKnown RBP15.7■□□□□ 0.1
MED28-203ENST00000503945 NEUROD2Q15784 382 aa15.7■□□□□ 0.1
MED28-203ENST00000503945 TSPYL4Q9UJ04 414 aa15.7■□□□□ 0.1
MED28-203ENST00000503945 COL11A2P13942 1736 aaPredicted RBP15.7■□□□□ 0.1
MED28-203ENST00000503945 GTF2E1P29083 439 aaPredicted RBP15.69■□□□□ 0.1
MED28-203ENST00000503945 ERFEQ4G0M1 354 aa15.69■□□□□ 0.1
MED28-203ENST00000503945 BABAM1Q9NWV8 329 aa15.69■□□□□ 0.1
MED28-203ENST00000503945 NIP7Q9Y221 180 aaKnown RBP eCLIP15.69■□□□□ 0.1
MED28-203ENST00000503945 SCN7AQ01118 1682 aa15.69■□□□□ 0.1
MED28-203ENST00000503945 ZEB1P37275 1124 aaPredicted RBP15.68■□□□□ 0.1
MED28-203ENST00000503945 CNKSR1Q969H4 720 aa15.68■□□□□ 0.1
MED28-203ENST00000503945 RUNDC1Q96C34 613 aa15.68■□□□□ 0.1
MED28-203ENST00000503945 ADAMTS8Q9UP79 889 aa15.68■□□□□ 0.1
MED28-203ENST00000503945 ERVV-1B6SEH8 477 aa15.67■□□□□ 0.1
MED28-203ENST00000503945 SRGNP10124 158 aa15.67■□□□□ 0.1
MED28-203ENST00000503945 MYL6BP14649 208 aa15.67■□□□□ 0.1
MED28-203ENST00000503945 STYK1Q6J9G0 422 aa15.67■□□□□ 0.1
MED28-203ENST00000503945 CCDC146Q8IYE0 955 aa15.67■□□□□ 0.1
MED28-203ENST00000503945 PCNTO95613 3336 aa15.66■□□□□ 0.1
MED28-203ENST00000503945 DDNO94850 711 aaPredicted RBP15.66■□□□□ 0.1
MED28-203ENST00000503945 EIF2S2P20042 333 aaKnown RBP15.66■□□□□ 0.1
MED28-203ENST00000503945 HLFQ16534 295 aa15.66■□□□□ 0.1
MED28-203ENST00000503945 KIF6Q6ZMV9 814 aa15.66■□□□□ 0.1
MED28-203ENST00000503945 MASTLQ96GX5 879 aa15.66■□□□□ 0.1
MED28-203ENST00000503945 TAOK3Q9H2K8 898 aa15.66■□□□□ 0.1
MED28-203ENST00000503945 PRKRIP1Q9H875 184 aaPredicted RBP15.66■□□□□ 0.1
MED28-203ENST00000503945 LTBP3Q9NS15 1303 aa15.66■□□□□ 0.1
MED28-203ENST00000503945 BCORQ6W2J9 1755 aa15.65■□□□□ 0.1
MED28-203ENST00000503945 FAM177BA6PVY3 158 aa15.65■□□□□ 0.1
MED28-203ENST00000503945 PRPF40BQ6NWY9 871 aaKnown RBP15.65■□□□□ 0.1
MED28-203ENST00000503945 POTEIP0CG38 1075 aa15.64■□□□□ 0.09
MED28-203ENST00000503945 POTEJP0CG39 1038 aa15.64■□□□□ 0.09
MED28-203ENST00000503945 HSPA1AP0DMV8 641 aaKnown RBP15.64■□□□□ 0.09
MED28-203ENST00000503945 HSPA1BP0DMV9 641 aaKnown RBP15.64■□□□□ 0.09
MED28-203ENST00000503945 C7orf43Q8WVR3 580 aa15.64■□□□□ 0.09
MED28-203ENST00000503945 LAS1LQ9Y4W2 734 aaKnown RBP15.64■□□□□ 0.09
MED28-203ENST00000503945 ARFGEF2Q9Y6D5 1785 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 CAPN15O75808 1086 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 SOGA3Q5TF21 947 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 CHADLQ6NUI6 762 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 TNS4Q8IZW8 715 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 NYXQ9GZU5 481 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 MAP3K15Q6ZN16 1313 aa15.63■□□□□ 0.09
MED28-203ENST00000503945 KLRG2A4D1S0 409 aaPredicted RBP15.62■□□□□ 0.09
MED28-203ENST00000503945 NPR1P16066 1061 aa15.62■□□□□ 0.09
MED28-203ENST00000503945 ALDH1B1P30837 517 aa15.62■□□□□ 0.09
MED28-203ENST00000503945 TTLL7Q6ZT98 887 aa15.62■□□□□ 0.09
MED28-203ENST00000503945 ERBB4Q15303 1308 aa15.62■□□□□ 0.09
MED28-203ENST00000503945 CHL1O00533 1208 aa15.61■□□□□ 0.09
MED28-203ENST00000503945 ZBTB3Q9H5J0 574 aa15.61■□□□□ 0.09
MED28-203ENST00000503945 TRIM35Q9UPQ4 493 aa15.61■□□□□ 0.09
MED28-203ENST00000503945 OLFM4Q6UX06 510 aa15.6■□□□□ 0.09
MED28-203ENST00000503945 CREBZFQ9NS37 354 aa15.6■□□□□ 0.09
MED28-203ENST00000503945 CCDC93Q567U6 631 aa15.59■□□□□ 0.09
MED28-203ENST00000503945 GIGYF2Q6Y7W6 1299 aaKnown RBP15.59■□□□□ 0.09
MED28-203ENST00000503945 PPP1R42Q7Z4L9 355 aa15.59■□□□□ 0.09
MED28-203ENST00000503945 MKRN1Q9UHC7 482 aaKnown RBP15.59■□□□□ 0.09
MED28-203ENST00000503945 SCN4AP35499 1836 aa15.59■□□□□ 0.09
MED28-203ENST00000503945 GPTP24298 496 aa15.58■□□□□ 0.08
MED28-203ENST00000503945 PDIA6Q15084 440 aa15.58■□□□□ 0.08
MED28-203ENST00000503945 NUTM1Q86Y26 1132 aa15.58■□□□□ 0.08
MED28-203ENST00000503945 ZNF34Q8IZ26 560 aa15.58■□□□□ 0.08
MED28-203ENST00000503945 NECTIN2Q92692 538 aa15.58■□□□□ 0.08
MED28-203ENST00000503945 ZNF277Q9NRM2 450 aaPredicted RBP15.58■□□□□ 0.08
MED28-203ENST00000503945 FKBP4Q02790 459 aaKnown RBP eCLIP15.57■□□□□ 0.08
MED28-203ENST00000503945 AIMP1Q12904 312 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms