RNA–Protein interactions for RNA: ENST00000503942.1

UBE3D-205, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 3

Gene UBE3D, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-205ENST00000503942 PCDHGA11Q9Y5H2 935 aa9.26□□□□□ -0.93
UBE3D-205ENST00000503942 FAM229AH3BQW9 127 aa9.25□□□□□ -0.93
UBE3D-205ENST00000503942 TNFRSF25Q93038 417 aa9.25□□□□□ -0.93
UBE3D-205ENST00000503942 ZFP64Q9NPA5 681 aa9.25□□□□□ -0.93
UBE3D-205ENST00000503942 STARD13Q9Y3M8 1113 aa9.25□□□□□ -0.93
UBE3D-205ENST00000503942 ALBP02768 609 aa9.24□□□□□ -0.93
UBE3D-205ENST00000503942 LRRC69Q6ZNQ3 347 aa9.24□□□□□ -0.93
UBE3D-205ENST00000503942 GPC6Q9Y625 555 aaPredicted RBP9.24□□□□□ -0.93
UBE3D-205ENST00000503942 EML1O00423 815 aa9.23□□□□□ -0.93
UBE3D-205ENST00000503942 BACH1O14867 736 aa9.23□□□□□ -0.93
UBE3D-205ENST00000503942 TEAD4Q15561 434 aa9.23□□□□□ -0.93
UBE3D-205ENST00000503942 PRSS36Q5K4E3 855 aa9.23□□□□□ -0.93
UBE3D-205ENST00000503942 L3MBTL2Q969R5 705 aa9.23□□□□□ -0.93
UBE3D-205ENST00000503942 NID1P14543 1247 aa9.22□□□□□ -0.93
UBE3D-205ENST00000503942 TRIM28Q13263 835 aaKnown RBP9.22□□□□□ -0.93
UBE3D-205ENST00000503942 WASHC4Q2M389 1173 aa9.22□□□□□ -0.93
UBE3D-205ENST00000503942 MICALL1Q8N3F8 863 aa9.22□□□□□ -0.93
UBE3D-205ENST00000503942 SLC30A3Q99726 388 aa9.22□□□□□ -0.93
UBE3D-205ENST00000503942 SOX11P35716 441 aa9.21□□□□□ -0.94
UBE3D-205ENST00000503942 ADH7P40394 386 aa9.21□□□□□ -0.94
UBE3D-205ENST00000503942 SFSWAPQ12872 951 aaKnown RBP9.21□□□□□ -0.94
UBE3D-205ENST00000503942 SEMA3FQ13275 785 aa9.21□□□□□ -0.94
UBE3D-205ENST00000503942 C7orf43Q8WVR3 580 aa9.21□□□□□ -0.94
UBE3D-205ENST00000503942 KRTAP4-12Q9BQ66 201 aa9.21□□□□□ -0.94
UBE3D-205ENST00000503942 GDPD2Q9HCC8 539 aa9.21□□□□□ -0.94
UBE3D-205ENST00000503942 EPHA4P54764 986 aa9.2□□□□□ -0.94
UBE3D-205ENST00000503942 C8orf86Q6ZUL3 223 aa9.2□□□□□ -0.94
UBE3D-205ENST00000503942 PIK3CDO00329 1044 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 NOS2P35228 1153 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 ABL2P42684 1182 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 SPEM2Q0P670 501 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 GRIK4Q16099 956 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 EML3Q32P44 896 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 ZNF358Q9NW07 568 aa9.19□□□□□ -0.94
UBE3D-205ENST00000503942 GTF2IP78347 998 aa9.18□□□□□ -0.94
UBE3D-205ENST00000503942 NEUROD1Q13562 356 aa9.18□□□□□ -0.94
UBE3D-205ENST00000503942 C20orf204Q6ZNR8 217 aa9.18□□□□□ -0.94
UBE3D-205ENST00000503942 SLC9A9Q8IVB4 645 aa9.18□□□□□ -0.94
UBE3D-205ENST00000503942 NOD1Q9Y239 953 aa9.18□□□□□ -0.94
UBE3D-205ENST00000503942 H2AFB1P0C5Y9 115 aa9.17□□□□□ -0.94
UBE3D-205ENST00000503942 H2AFB2P0C5Z0 115 aa9.17□□□□□ -0.94
UBE3D-205ENST00000503942 LCE3BQ5TA77 95 aa9.17□□□□□ -0.94
UBE3D-205ENST00000503942 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.17□□□□□ -0.94
UBE3D-205ENST00000503942 NEUROD4Q9HD90 331 aa9.17□□□□□ -0.94
UBE3D-205ENST00000503942 ZNF232Q9UNY5 417 aa9.17□□□□□ -0.94
UBE3D-205ENST00000503942 C9orf172C9J069 976 aa9.16□□□□□ -0.94
UBE3D-205ENST00000503942 ADGRE1Q14246 886 aa9.16□□□□□ -0.94
UBE3D-205ENST00000503942 MBTPS1Q14703 1052 aa9.16□□□□□ -0.94
UBE3D-205ENST00000503942 NBPF11Q86T75 865 aa9.16□□□□□ -0.94
UBE3D-205ENST00000503942 TIMELESSQ9UNS1 1208 aa9.16□□□□□ -0.94
UBE3D-205ENST00000503942 SERTM1A2A2V5 107 aa9.15□□□□□ -0.94
UBE3D-205ENST00000503942 LZTS3O60299 673 aaPredicted RBP9.15□□□□□ -0.94
UBE3D-205ENST00000503942 PSME1Q06323 249 aa9.15□□□□□ -0.94
UBE3D-205ENST00000503942 LRP8Q14114 963 aa9.15□□□□□ -0.94
UBE3D-205ENST00000503942 RAB44Q7Z6P3 723 aaPredicted RBP9.15□□□□□ -0.94
UBE3D-205ENST00000503942 RHPN1Q8TCX5 695 aa9.15□□□□□ -0.94
UBE3D-205ENST00000503942 LILRB5O75023 590 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 ELNP15502 786 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 SELPP16109 830 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 KCNQ4P56696 695 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 TBCELQ5QJ74 424 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 SH3PXD2AQ5TCZ1 1133 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 BRD7Q9NPI1 651 aa9.14□□□□□ -0.95
UBE3D-205ENST00000503942 SKIP12755 728 aa9.13□□□□□ -0.95
UBE3D-205ENST00000503942 TRAPPC3LQ5T215 181 aa9.13□□□□□ -0.95
UBE3D-205ENST00000503942 TXNRD3Q86VQ6 643 aa9.13□□□□□ -0.95
UBE3D-205ENST00000503942 TNS4Q8IZW8 715 aa9.13□□□□□ -0.95
UBE3D-205ENST00000503942 NFATC2IPQ8NCF5 419 aa9.13□□□□□ -0.95
UBE3D-205ENST00000503942 A0A0A0MRY4 1105 aa9.12□□□□□ -0.95
UBE3D-205ENST00000503942 HIRAP54198 1017 aaPredicted RBP9.12□□□□□ -0.95
UBE3D-205ENST00000503942 NCOA4Q13772 614 aa9.12□□□□□ -0.95
UBE3D-205ENST00000503942 TYRO3Q06418 890 aa9.11□□□□□ -0.95
UBE3D-205ENST00000503942 C1orf53Q5VUE5 145 aa9.11□□□□□ -0.95
UBE3D-205ENST00000503942 LENG1Q96BZ8 264 aaPredicted RBP9.11□□□□□ -0.95
UBE3D-205ENST00000503942 CEP63Q96MT8 703 aa9.11□□□□□ -0.95
UBE3D-205ENST00000503942 PSMA6P60900 246 aaKnown RBP9.1□□□□□ -0.95
UBE3D-205ENST00000503942 NRG1Q02297 640 aaPredicted RBP9.1□□□□□ -0.95
UBE3D-205ENST00000503942 POTEAQ6S8J7 498 aa9.1□□□□□ -0.95
UBE3D-205ENST00000503942 HSH2DQ96JZ2 352 aa9.1□□□□□ -0.95
UBE3D-205ENST00000503942 ANKIB1Q9P2G1 1089 aa9.1□□□□□ -0.95
UBE3D-205ENST00000503942 KCNH4Q9UQ05 1017 aa9.1□□□□□ -0.95
UBE3D-205ENST00000503942 RAC1P63000 192 aa9.09□□□□□ -0.95
UBE3D-205ENST00000503942 SLC6A14Q9UN76 642 aa9.08□□□□□ -0.96
UBE3D-205ENST00000503942 USP17L5A8MUK1 530 aa9.07□□□□□ -0.96
UBE3D-205ENST00000503942 HYAL3O43820 417 aaPredicted RBP9.07□□□□□ -0.96
UBE3D-205ENST00000503942 SHISA2Q6UWI4 295 aa9.07□□□□□ -0.96
UBE3D-205ENST00000503942 BHMTQ93088 406 aa9.07□□□□□ -0.96
UBE3D-205ENST00000503942 SSBP4Q9BWG4 385 aaPredicted RBP9.07□□□□□ -0.96
UBE3D-205ENST00000503942 PHACTR1Q9C0D0 580 aa9.07□□□□□ -0.96
UBE3D-205ENST00000503942 ALG2Q9H553 416 aa9.07□□□□□ -0.96
UBE3D-205ENST00000503942 SFI1A8K8P3 1242 aa9.06□□□□□ -0.96
UBE3D-205ENST00000503942 MCM6Q14566 821 aa9.06□□□□□ -0.96
UBE3D-205ENST00000503942 ZNF280CQ8ND82 737 aa9.06□□□□□ -0.96
UBE3D-205ENST00000503942 SUSD3Q96L08 255 aa9.06□□□□□ -0.96
UBE3D-205ENST00000503942 TSPAN10Q9H1Z9 355 aaPredicted RBP9.06□□□□□ -0.96
UBE3D-205ENST00000503942 JPH1Q9HDC5 661 aaPredicted RBP9.06□□□□□ -0.96
UBE3D-205ENST00000503942 TBC1D8BQ0IIM8 1120 aa9.05□□□□□ -0.96
UBE3D-205ENST00000503942 TRIM50Q86XT4 487 aa9.05□□□□□ -0.96
UBE3D-205ENST00000503942 DEPDC4Q8N2C3 294 aa9.05□□□□□ -0.96
UBE3D-205ENST00000503942 TPCN2Q8NHX9 752 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms