RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 USP42Q9H9J4 1324 aaKnown RBP14.61□□□□□ -0.07
NUP54-202ENST00000502850 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.6□□□□□ -0.07
NUP54-202ENST00000502850 CHMLP26374 656 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 UNC5CLQ8IV45 518 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 IFNL2Q8IZJ0 200 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 LINS1Q8NG48 757 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 RILPL2Q969X0 211 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 IL17RAQ96F46 866 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 SLC52A2Q9HAB3 445 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 NLRP2Q9NX02 1062 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 MAP3K2Q9Y2U5 619 aa14.6□□□□□ -0.07
NUP54-202ENST00000502850 KDM6AO15550 1401 aaPredicted RBP14.6□□□□□ -0.07
NUP54-202ENST00000502850 NBPF7P0C2Y1 421 aaPredicted RBP14.59□□□□□ -0.07
NUP54-202ENST00000502850 ZC3H6P61129 1189 aaKnown RBP14.59□□□□□ -0.07
NUP54-202ENST00000502850 CNTROBQ8N137 903 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 GJD4Q96KN9 370 aaPredicted RBP14.59□□□□□ -0.07
NUP54-202ENST00000502850 MEGF6O75095 1541 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 SLIT2O94813 1529 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 UTYO14607 1347 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 GOLGA6L3A6NEY3 463 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 CSB-PGBD3P0DP91 1061 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 PHKG2P15735 406 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 OS9Q13438 667 aaPredicted RBP14.59□□□□□ -0.07
NUP54-202ENST00000502850 ZNF790Q6PG37 636 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 ABCA3Q99758 1704 aa14.59□□□□□ -0.07
NUP54-202ENST00000502850 NEXNQ0ZGT2 675 aa14.58□□□□□ -0.08
NUP54-202ENST00000502850 LARP1Q6PKG0 1096 aaKnown RBP14.58□□□□□ -0.08
NUP54-202ENST00000502850 CLASRPQ8N2M8 674 aaKnown RBP14.58□□□□□ -0.08
NUP54-202ENST00000502850 DCAF5Q96JK2 942 aa14.58□□□□□ -0.08
NUP54-202ENST00000502850 GLRX3O76003 335 aaKnown RBP14.57□□□□□ -0.08
NUP54-202ENST00000502850 IL1RAPL2Q9NP60 686 aa14.57□□□□□ -0.08
NUP54-202ENST00000502850 ANO2Q9NQ90 1003 aa14.57□□□□□ -0.08
NUP54-202ENST00000502850 GRM8O00222 908 aa14.56□□□□□ -0.08
NUP54-202ENST00000502850 TTC5Q8N0Z6 440 aa14.56□□□□□ -0.08
NUP54-202ENST00000502850 NWD2Q9ULI1 1742 aa14.56□□□□□ -0.08
NUP54-202ENST00000502850 PLCH1Q4KWH8 1693 aa14.55□□□□□ -0.08
NUP54-202ENST00000502850 TSHZ3Q63HK5 1081 aa14.55□□□□□ -0.08
NUP54-202ENST00000502850 PI4K2BQ8TCG2 481 aa14.55□□□□□ -0.08
NUP54-202ENST00000502850 RUFY2Q8WXA3 655 aa14.55□□□□□ -0.08
NUP54-202ENST00000502850 AFDNP55196 1824 aaKnown RBP14.55□□□□□ -0.08
NUP54-202ENST00000502850 ANXA1P04083 346 aa14.55□□□□□ -0.08
NUP54-202ENST00000502850 NUTM1Q86Y26 1132 aa14.55□□□□□ -0.08
NUP54-202ENST00000502850 ERBB4Q15303 1308 aa14.54□□□□□ -0.08
NUP54-202ENST00000502850 FSD2A1L4K1 749 aa14.54□□□□□ -0.08
NUP54-202ENST00000502850 SNRPA1P09661 255 aaKnown RBP14.54□□□□□ -0.08
NUP54-202ENST00000502850 RIC3Q7Z5B4 369 aa14.54□□□□□ -0.08
NUP54-202ENST00000502850 FMNL2Q96PY5 1086 aa14.54□□□□□ -0.08
NUP54-202ENST00000502850 FOXD4L1Q9NU39 408 aa14.54□□□□□ -0.08
NUP54-202ENST00000502850 COL15A1P39059 1388 aa14.54□□□□□ -0.08
NUP54-202ENST00000502850 RAD50Q92878 1312 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 GLI3P10071 1580 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 HIP1O00291 1037 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 IFIT2P09913 472 aaKnown RBP14.53□□□□□ -0.08
NUP54-202ENST00000502850 MRE11P49959 708 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 NEK4P51957 841 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 VPS72Q15906 364 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 PROSER3Q2NL68 480 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 INTS4Q96HW7 963 aaKnown RBP14.53□□□□□ -0.08
NUP54-202ENST00000502850 ECHDC1Q9NTX5 307 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 ARFGEF2Q9Y6D5 1785 aa14.53□□□□□ -0.08
NUP54-202ENST00000502850 BAG4O95429 457 aaKnown RBP14.52□□□□□ -0.08
NUP54-202ENST00000502850 CYP2E1P05181 493 aaPredicted RBP14.52□□□□□ -0.08
NUP54-202ENST00000502850 SSFA2P28290 1259 aa14.52□□□□□ -0.08
NUP54-202ENST00000502850 HSPA4P34932 840 aa14.52□□□□□ -0.08
NUP54-202ENST00000502850 PDIA6Q15084 440 aa14.52□□□□□ -0.08
NUP54-202ENST00000502850 KIAA1211Q6ZU35 1233 aa14.52□□□□□ -0.08
NUP54-202ENST00000502850 CCDC9Q9Y3X0 531 aaKnown RBP14.52□□□□□ -0.08
NUP54-202ENST00000502850 UBR2Q8IWV8 1755 aa14.52□□□□□ -0.09
NUP54-202ENST00000502850 SGSM2O43147 1006 aa14.52□□□□□ -0.09
NUP54-202ENST00000502850 G3BP1Q13283 466 aaKnown RBP eCLIP14.52□□□□□ -0.09
NUP54-202ENST00000502850 METTL22Q9BUU2 404 aaPredicted RBP14.52□□□□□ -0.09
NUP54-202ENST00000502850 CUL4AQ13619 759 aa14.51□□□□□ -0.09
NUP54-202ENST00000502850 CWF19L2Q2TBE0 894 aaKnown RBP14.51□□□□□ -0.09
NUP54-202ENST00000502850 NFATC2IPQ8NCF5 419 aa14.51□□□□□ -0.09
NUP54-202ENST00000502850 DIAPH3Q9NSV4 1193 aa14.51□□□□□ -0.09
NUP54-202ENST00000502850 BRWD3Q6RI45 1802 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 PAPPAQ13219 1627 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 PCDH11XQ9BZA7 1347 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 PCDH11YQ9BZA8 1340 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 COL14A1Q05707 1796 aaKnown RBP14.5□□□□□ -0.09
NUP54-202ENST00000502850 NEURL1BA8MQ27 555 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 KLHL40Q2TBA0 621 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 EVI5LQ96CN4 794 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 BTG4Q9NY30 223 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 BRPF3Q9ULD4 1205 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 WDR17Q8IZU2 1322 aa14.5□□□□□ -0.09
NUP54-202ENST00000502850 PRAMEF22A3QJZ6 481 aa14.49□□□□□ -0.09
NUP54-202ENST00000502850 CABP4P57796 275 aa14.49□□□□□ -0.09
NUP54-202ENST00000502850 AIMP1Q12904 312 aaKnown RBP14.49□□□□□ -0.09
NUP54-202ENST00000502850 SUCLG2Q96I99 432 aa14.49□□□□□ -0.09
NUP54-202ENST00000502850 TMX3Q96JJ7 454 aa14.49□□□□□ -0.09
NUP54-202ENST00000502850 GZF1Q9H116 711 aaPredicted RBP14.49□□□□□ -0.09
NUP54-202ENST00000502850 ONECUT3O60422 494 aaPredicted RBP14.48□□□□□ -0.09
NUP54-202ENST00000502850 GCKRQ14397 625 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 CCDC125Q86Z20 511 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 SEPT12Q8IYM1 358 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 XAGE3Q8WTP9 111 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 ZNF496Q96IT1 587 aaPredicted RBP14.48□□□□□ -0.09
NUP54-202ENST00000502850 NRAPQ86VF7 1730 aa14.48□□□□□ -0.09
NUP54-202ENST00000502850 CYP27B1O15528 508 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms