RNA–Protein interactions for RNA: ENST00000497755.1

CLIC4-204, Transcript of chloride intracellular channel 4, humanhuman

TSL 3

Gene CLIC4, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-204ENST00000497755 LTBP3Q9NS15 1303 aa29.19■■■□□ 2.26
CLIC4-204ENST00000497755 PIP4K2AP48426 406 aaPredicted RBP29.18■■■□□ 2.26
CLIC4-204ENST00000497755 TAOK3Q9H2K8 898 aa29.18■■■□□ 2.26
CLIC4-204ENST00000497755 PRAMEF22A3QJZ6 481 aa29.16■■■□□ 2.26
CLIC4-204ENST00000497755 NPHP1O15259 732 aa29.16■■■□□ 2.26
CLIC4-204ENST00000497755 ST5P78524 1137 aa29.16■■■□□ 2.26
CLIC4-204ENST00000497755 PRPF40BQ6NWY9 871 aaKnown RBP29.16■■■□□ 2.26
CLIC4-204ENST00000497755 MASTLQ96GX5 879 aa29.16■■■□□ 2.26
CLIC4-204ENST00000497755 CLEC4GQ6UXB4 293 aa29.14■■■□□ 2.26
CLIC4-204ENST00000497755 CFAP53Q96M91 514 aa29.14■■■□□ 2.26
CLIC4-204ENST00000497755 DDNO94850 711 aaPredicted RBP29.13■■■□□ 2.25
CLIC4-204ENST00000497755 BCORQ6W2J9 1755 aa29.12■■■□□ 2.25
CLIC4-204ENST00000497755 SNRPA1P09661 255 aaKnown RBP29.12■■■□□ 2.25
CLIC4-204ENST00000497755 MCM10Q7L590 875 aa29.12■■■□□ 2.25
CLIC4-204ENST00000497755 C7orf43Q8WVR3 580 aa29.12■■■□□ 2.25
CLIC4-204ENST00000497755 SOGA3Q5TF21 947 aa29.11■■■□□ 2.25
CLIC4-204ENST00000497755 NBPF5PQ86XG9 351 aaPredicted RBP29.11■■■□□ 2.25
CLIC4-204ENST00000497755 NUDCQ9Y266 331 aa29.11■■■□□ 2.25
CLIC4-204ENST00000497755 CACNA1SQ13698 1873 aa29.1■■■□□ 2.25
CLIC4-204ENST00000497755 HSPA1AP0DMV8 641 aaKnown RBP29.1■■■□□ 2.25
CLIC4-204ENST00000497755 HSPA1BP0DMV9 641 aaKnown RBP29.1■■■□□ 2.25
CLIC4-204ENST00000497755 CHADLQ6NUI6 762 aa29.1■■■□□ 2.25
CLIC4-204ENST00000497755 POTEIP0CG38 1075 aa29.09■■■□□ 2.25
CLIC4-204ENST00000497755 POTEJP0CG39 1038 aa29.09■■■□□ 2.25
CLIC4-204ENST00000497755 U2AF1L5P0DN76 240 aaPredicted RBP29.09■■■□□ 2.25
CLIC4-204ENST00000497755 U2AF1Q01081 240 aaKnown RBP eCLIP29.09■■■□□ 2.25
CLIC4-204ENST00000497755 TNS4Q8IZW8 715 aa29.09■■■□□ 2.25
CLIC4-204ENST00000497755 RTF1Q92541 710 aaKnown RBP29.09■■■□□ 2.25
CLIC4-204ENST00000497755 KLRG2A4D1S0 409 aaPredicted RBP29.08■■■□□ 2.25
CLIC4-204ENST00000497755 NBPF26B4DH59 902 aa29.08■■■□□ 2.25
CLIC4-204ENST00000497755 NBPF10Q6P3W6 841 aaKnown RBP29.08■■■□□ 2.25
CLIC4-204ENST00000497755 NBPF15Q8N660 670 aa29.08■■■□□ 2.25
CLIC4-204ENST00000497755 DCTN1Q14203 1278 aa29.07■■■□□ 2.24
CLIC4-204ENST00000497755 ZNF652Q9Y2D9 606 aa29.07■■■□□ 2.24
CLIC4-204ENST00000497755 ARFGEF2Q9Y6D5 1785 aa29.07■■■□□ 2.24
CLIC4-204ENST00000497755 NPR1P16066 1061 aa29.06■■■□□ 2.24
CLIC4-204ENST00000497755 PPP2R1AP30153 589 aa29.05■■■□□ 2.24
CLIC4-204ENST00000497755 TPTE2Q6XPS3 522 aa29.05■■■□□ 2.24
CLIC4-204ENST00000497755 RGL2O15211 777 aa29.04■■■□□ 2.24
CLIC4-204ENST00000497755 HTATSF1O43719 755 aaKnown RBP29.04■■■□□ 2.24
CLIC4-204ENST00000497755 CCDC93Q567U6 631 aa29.04■■■□□ 2.24
CLIC4-204ENST00000497755 CREBZFQ9NS37 354 aa29.04■■■□□ 2.24
CLIC4-204ENST00000497755 NIP7Q9Y221 180 aaKnown RBP eCLIP29.04■■■□□ 2.24
CLIC4-204ENST00000497755 CAPN15O75808 1086 aa29.03■■■□□ 2.24
CLIC4-204ENST00000497755 L3MBTL3Q96JM7 780 aaPredicted RBP29.02■■■□□ 2.24
CLIC4-204ENST00000497755 HLFQ16534 295 aa29.01■■■□□ 2.23
CLIC4-204ENST00000497755 OLFM4Q6UX06 510 aa29.01■■■□□ 2.23
CLIC4-204ENST00000497755 IQCA1LA6NCM1 817 aa29■■■□□ 2.23
CLIC4-204ENST00000497755 FAM177BA6PVY3 158 aa29■■■□□ 2.23
CLIC4-204ENST00000497755 FKBP4Q02790 459 aaKnown RBP eCLIP29■■■□□ 2.23
CLIC4-204ENST00000497755 TAF7Q15545 349 aaPredicted RBP29■■■□□ 2.23
CLIC4-204ENST00000497755 TAF1DQ9H5J8 278 aaPredicted RBP29■■■□□ 2.23
CLIC4-204ENST00000497755 ZNF277Q9NRM2 450 aaPredicted RBP29■■■□□ 2.23
CLIC4-204ENST00000497755 MKRN1Q9UHC7 482 aaKnown RBP29■■■□□ 2.23
CLIC4-204ENST00000497755 MIS18AQ9NYP9 233 aa28.99■■■□□ 2.23
CLIC4-204ENST00000497755 LDHDQ86WU2 507 aa28.98■■■□□ 2.23
CLIC4-204ENST00000497755 SCN4AP35499 1836 aa28.97■■■□□ 2.23
CLIC4-204ENST00000497755 RTKN2Q8IZC4 609 aa28.97■■■□□ 2.23
CLIC4-204ENST00000497755 PASKQ96RG2 1323 aa28.96■■■□□ 2.23
CLIC4-204ENST00000497755 ZNF541Q9H0D2 1346 aa28.95■■■□□ 2.23
CLIC4-204ENST00000497755 ALDH1B1P30837 517 aa28.95■■■□□ 2.22
CLIC4-204ENST00000497755 ITGBL1O95965 494 aaPredicted RBP28.93■■■□□ 2.22
CLIC4-204ENST00000497755 SYNE4Q8N205 404 aa28.93■■■□□ 2.22
CLIC4-204ENST00000497755 GTF2E1P29083 439 aaPredicted RBP28.92■■■□□ 2.22
CLIC4-204ENST00000497755 NGEFQ8N5V2 710 aa28.92■■■□□ 2.22
CLIC4-204ENST00000497755 FZD9O00144 591 aa28.91■■■□□ 2.22
CLIC4-204ENST00000497755 IARSP41252 1262 aaKnown RBP28.91■■■□□ 2.22
CLIC4-204ENST00000497755 HACL1Q9UJ83 578 aa28.91■■■□□ 2.22
CLIC4-204ENST00000497755 CNTNAP1P78357 1384 aa28.9■■■□□ 2.22
CLIC4-204ENST00000497755 CRY2Q49AN0 593 aa28.9■■■□□ 2.22
CLIC4-204ENST00000497755 EAPPQ56P03 285 aaPredicted RBP28.9■■■□□ 2.22
CLIC4-204ENST00000497755 ERVV-1B6SEH8 477 aa28.89■■■□□ 2.22
CLIC4-204ENST00000497755 NUTM1Q86Y26 1132 aa28.89■■■□□ 2.22
CLIC4-204ENST00000497755 EPHX2P34913 555 aa28.88■■■□□ 2.21
CLIC4-204ENST00000497755 PNISRQ8TF01 805 aaKnown RBP28.88■■■□□ 2.21
CLIC4-204ENST00000497755 TMEM88BA6NKF7 163 aa28.87■■■□□ 2.21
CLIC4-204ENST00000497755 TTLL7Q6ZT98 887 aa28.87■■■□□ 2.21
CLIC4-204ENST00000497755 PSMD1Q99460 953 aa28.87■■■□□ 2.21
CLIC4-204ENST00000497755 NYXQ9GZU5 481 aa28.87■■■□□ 2.21
CLIC4-204ENST00000497755 CLEC11AQ9Y240 323 aa28.87■■■□□ 2.21
CLIC4-204ENST00000497755 ABCC12Q96J65 1359 aa28.87■■■□□ 2.21
CLIC4-204ENST00000497755 SNED1Q8TER0 1413 aa28.86■■■□□ 2.21
CLIC4-204ENST00000497755 NUP98P52948 1817 aa28.86■■■□□ 2.21
CLIC4-204ENST00000497755 EIF4A1P60842 406 aaKnown RBP28.86■■■□□ 2.21
CLIC4-204ENST00000497755 RRP7AQ9Y3A4 280 aaKnown RBP28.86■■■□□ 2.21
CLIC4-204ENST00000497755 MAP3K15Q6ZN16 1313 aa28.86■■■□□ 2.21
CLIC4-204ENST00000497755 FOXN1O15353 648 aa28.85■■■□□ 2.21
CLIC4-204ENST00000497755 VEGFBP49765 207 aa28.85■■■□□ 2.21
CLIC4-204ENST00000497755 RNF123Q5XPI4 1314 aa28.85■■■□□ 2.21
CLIC4-204ENST00000497755 LAMB4A4D0S4 1761 aa28.85■■■□□ 2.21
CLIC4-204ENST00000497755 DLG5Q8TDM6 1919 aa28.84■■■□□ 2.21
CLIC4-204ENST00000497755 PNMA8AQ86V59 439 aaPredicted RBP28.84■■■□□ 2.21
CLIC4-204ENST00000497755 GPC2Q8N158 579 aa28.84■■■□□ 2.21
CLIC4-204ENST00000497755 PLEKHF1Q96S99 279 aa28.84■■■□□ 2.21
CLIC4-204ENST00000497755 ADAMTSL1Q8N6G6 1762 aa28.83■■■□□ 2.21
CLIC4-204ENST00000497755 HOXA10P31260 410 aaPredicted RBP28.83■■■□□ 2.21
CLIC4-204ENST00000497755 CC2D2BQ6DHV5 1058 aa28.83■■■□□ 2.21
CLIC4-204ENST00000497755 CNTROBQ8N137 903 aa28.83■■■□□ 2.21
CLIC4-204ENST00000497755 MYL6BP14649 208 aa28.82■■■□□ 2.2
CLIC4-204ENST00000497755 MAP1SQ66K74 1059 aaPredicted RBP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms