RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 MAATS1Q7Z4T9 603 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 SPAG5Q96R06 1193 aa6.7□□□□□ -1.34
USF3-204ENST00000496826 LMAN1P49257 510 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 TBC1D31Q96DN5 1066 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 NCBP1Q09161 790 aaKnown RBP6.69□□□□□ -1.34
USF3-204ENST00000496826 MSL1Q68DK7 614 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 CCDC114Q96M63 670 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.69□□□□□ -1.34
USF3-204ENST00000496826 AMPHP49418 695 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 PYM1Q9BRP8 204 aaKnown RBP6.69□□□□□ -1.34
USF3-204ENST00000496826 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.69□□□□□ -1.34
USF3-204ENST00000496826 PPP4R3BQ5MIZ7 849 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 ANKRD24Q8TF21 1146 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 MRPL46Q9H2W6 279 aaKnown RBP6.69□□□□□ -1.34
USF3-204ENST00000496826 RCAN3Q9UKA8 241 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 CCDC30Q5VVM6 783 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 NINLQ9Y2I6 1382 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 LOC105371045A0A1W2PR82 267 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 RGS3P49796 1198 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 CKAP4Q07065 602 aaKnown RBP6.69□□□□□ -1.34
USF3-204ENST00000496826 KMT5BQ4FZB7 885 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 ARFGAP2Q8N6H7 521 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 VPS37BQ9H9H4 285 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 CTTNBP2NLQ9P2B4 639 aa6.69□□□□□ -1.34
USF3-204ENST00000496826 A6NNZ2 444 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 STK10O94804 968 aaKnown RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 TUBB8Q3ZCM7 444 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 RPRD1BQ9NQG5 326 aaKnown RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 TBC1D2BQ9UPU7 963 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 ARL1P40616 181 aaPredicted RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 RFWD2Q8NHY2 731 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 CCDC196A0A1B0GTZ2 297 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 MSH5O43196 834 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 FLIIQ13045 1269 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 RRP9O43818 475 aaKnown RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 MTRF1O75570 445 aaKnown RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 HARSP12081 509 aaKnown RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 LIG1P18858 919 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 HOXA7P31268 230 aaPredicted RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 HELBQ8NG08 1087 aaPredicted RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 TXNDC16Q9P2K2 825 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 KAT6BQ8WYB5 2073 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 CDKL5O76039 1030 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 AAMPQ13685 434 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 NOLC1Q14978 699 aaKnown RBP eCLIP6.68□□□□□ -1.34
USF3-204ENST00000496826 DACT3Q96B18 629 aaPredicted RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 KIF2CQ99661 725 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 NOP56O00567 594 aaKnown RBP6.68□□□□□ -1.34
USF3-204ENST00000496826 CIB2O75838 187 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 CLIP1P30622 1438 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 MCM2P49736 904 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 IL27Q8NEV9 243 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 TRIM8Q9BZR9 551 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 HYOU1Q9Y4L1 999 aa6.68□□□□□ -1.34
USF3-204ENST00000496826 PFDN6O15212 129 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 TBC1D12O60347 775 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 PDE6AP16499 860 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 TICAM2Q86XR7 235 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 PSMA8Q8TAA3 256 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 FAF1Q9UNN5 650 aaPredicted RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 ZNF330Q9Y3S2 320 aaPredicted RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 TEX28O15482 410 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 AFAP1L1Q8TED9 768 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.67□□□□□ -1.34
USF3-204ENST00000496826 ATAD2Q6PL18 1390 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 LPXNO60711 386 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 GHRP10912 638 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 PAFAH1B1P43034 410 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 BLVRAP53004 296 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 UBE4AQ14139 1066 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 SPA17Q15506 151 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 RBM26Q5T8P6 1007 aaKnown RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 NLRP13Q86W25 1043 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 TMOD2Q9NZR1 351 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 EFCAB8A8MWE9 144 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 RAB11FIP4Q86YS3 637 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 SIX6OS1Q8N1H7 587 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 DRC3Q9H069 523 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 FLOT1O75955 427 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 ZRANB2O95218 330 aaKnown RBP eCLIP6.67□□□□□ -1.34
USF3-204ENST00000496826 CCDC92Q53HC0 331 aaPredicted RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.67□□□□□ -1.34
USF3-204ENST00000496826 HNRNPCL2B2RXH8 293 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 BIRC5O15392 142 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 HNRNPCL1O60812 293 aaKnown RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 CRCPO75575 148 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 PHBP35232 272 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 MXRA7P84157 204 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 ZNF449Q6P9G9 518 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 CTAGE3PQ8IX95 158 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 TEX9Q8N6V9 391 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 WASF1Q92558 559 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 SCLT1Q96NL6 688 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 CFAP70Q5T0N1 1121 aa6.67□□□□□ -1.34
USF3-204ENST00000496826 TRIM56Q9BRZ2 755 aaKnown RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 ORC3Q9UBD5 711 aaPredicted RBP6.67□□□□□ -1.34
USF3-204ENST00000496826 C4BPBP20851 252 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 FAN1Q9Y2M0 1017 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 ATP5DP30049 168 aa6.66□□□□□ -1.34
USF3-204ENST00000496826 SDF4Q9BRK5 362 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms