RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 FRMPD1Q5SYB0 1578 aa10.52□□□□□ -0.72
VIM-207ENST00000495528 SNRPBP14678 240 aaKnown RBP10.52□□□□□ -0.73
VIM-207ENST00000495528 RHOQP17081 205 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 GTF2E1P29083 439 aaPredicted RBP10.52□□□□□ -0.73
VIM-207ENST00000495528 GPC1P35052 558 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 GAS2L2Q8NHY3 880 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 KIFC2Q96AC6 838 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 TRIM47Q96LD4 638 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 GRIP2Q9C0E4 1043 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 USP3Q9Y6I4 520 aa10.52□□□□□ -0.73
VIM-207ENST00000495528 DENND4BO75064 1496 aaPredicted RBP10.52□□□□□ -0.73
VIM-207ENST00000495528 POU4F2Q12837 409 aa10.51□□□□□ -0.73
VIM-207ENST00000495528 LYSMD3Q7Z3D4 306 aa10.51□□□□□ -0.73
VIM-207ENST00000495528 RETREG2Q8NC44 543 aa10.51□□□□□ -0.73
VIM-207ENST00000495528 BCORL1Q5H9F3 1711 aa10.5□□□□□ -0.73
VIM-207ENST00000495528 PHKA2P46019 1235 aa10.5□□□□□ -0.73
VIM-207ENST00000495528 HSPA2P54652 639 aa10.5□□□□□ -0.73
VIM-207ENST00000495528 TSPAN10Q9H1Z9 355 aaPredicted RBP10.5□□□□□ -0.73
VIM-207ENST00000495528 MADDQ8WXG6 1647 aa10.5□□□□□ -0.73
VIM-207ENST00000495528 FANCAO15360 1455 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 LMTK3Q96Q04 1460 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 M0R2N6 131 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 EPHA4P54764 986 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 MLECQ14165 292 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 MTFR1Q15390 333 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 SLC9A9Q8IVB4 645 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 SCHIP1Q9P0W5 487 aaPredicted RBP10.49□□□□□ -0.73
VIM-207ENST00000495528 EEA1Q15075 1411 aa10.49□□□□□ -0.73
VIM-207ENST00000495528 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.48□□□□□ -0.731e-6■□□□□ 10.3
VIM-207ENST00000495528 PCF11O94913 1555 aaKnown RBP10.48□□□□□ -0.73
VIM-207ENST00000495528 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.48□□□□□ -0.734e-13■□□□□ 10.1
VIM-207ENST00000495528 GNASQ5JWF2 1037 aa10.48□□□□□ -0.73
VIM-207ENST00000495528 PRIMPOLQ96LW4 560 aa10.48□□□□□ -0.73
VIM-207ENST00000495528 CABP1Q9NZU7 370 aa10.48□□□□□ -0.73
VIM-207ENST00000495528 YEATS2Q9ULM3 1422 aa10.48□□□□□ -0.73
VIM-207ENST00000495528 CDK2AP1O14519 115 aa10.47□□□□□ -0.73
VIM-207ENST00000495528 PRMT3O60678 531 aa10.47□□□□□ -0.73
VIM-207ENST00000495528 PPARGC1BQ86YN6 1023 aaKnown RBP10.47□□□□□ -0.73
VIM-207ENST00000495528 SCG3Q8WXD2 468 aaKnown RBP10.47□□□□□ -0.73
VIM-207ENST00000495528 IQSEC3Q9UPP2 1182 aaPredicted RBP10.47□□□□□ -0.73
VIM-207ENST00000495528 PARP3Q9Y6F1 533 aa10.47□□□□□ -0.73
VIM-207ENST00000495528 TMEM88BA6NKF7 163 aa10.46□□□□□ -0.73
VIM-207ENST00000495528 FOXK2Q01167 660 aa10.46□□□□□ -0.73
VIM-207ENST00000495528 C4orf17Q53FE4 359 aa10.46□□□□□ -0.73
VIM-207ENST00000495528 ZNF787Q6DD87 383 aa10.46□□□□□ -0.73
VIM-207ENST00000495528 TAS1R3Q7RTX0 852 aa10.46□□□□□ -0.73
VIM-207ENST00000495528 ARHGEF40Q8TER5 1519 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 PLCH2O75038 1416 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 POGZQ7Z3K3 1410 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 SCAPERQ9BY12 1400 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 PLA2G4AP47712 749 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 SWI5Q1ZZU3 235 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 NBPF10Q6P3W6 841 aaKnown RBP10.45□□□□□ -0.74
VIM-207ENST00000495528 NBPF15Q8N660 670 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 RHBDD1Q8TEB9 315 aa10.45□□□□□ -0.74
VIM-207ENST00000495528 RICTORQ6R327 1708 aa10.44□□□□□ -0.74
VIM-207ENST00000495528 RIMS1Q86UR5 1692 aaKnown RBP10.44□□□□□ -0.74
VIM-207ENST00000495528 ATAD2Q6PL18 1390 aa10.44□□□□□ -0.74
VIM-207ENST00000495528 PPP1R12BO60237 982 aaPredicted RBP10.44□□□□□ -0.74
VIM-207ENST00000495528 NIFKQ9BYG3 293 aaKnown RBP10.44□□□□□ -0.74
VIM-207ENST00000495528 SLAIN2Q9P270 581 aa10.44□□□□□ -0.74
VIM-207ENST00000495528 ZNF232Q9UNY5 417 aa10.44□□□□□ -0.74
VIM-207ENST00000495528 TTC37Q6PGP7 1564 aa10.43□□□□□ -0.74
VIM-207ENST00000495528 CDK13Q14004 1512 aaKnown RBP10.43□□□□□ -0.74
VIM-207ENST00000495528 ZFYVE16Q7Z3T8 1539 aa10.43□□□□□ -0.74
VIM-207ENST00000495528 SPATA31C2B4DYI2 1134 aa10.43□□□□□ -0.74
VIM-207ENST00000495528 C21orf2O43822 256 aa10.43□□□□□ -0.74
VIM-207ENST00000495528 AIDAQ96BJ3 306 aa10.43□□□□□ -0.74
VIM-207ENST00000495528 EFCAB5A4FU69 1503 aa10.43□□□□□ -0.74
VIM-207ENST00000495528 MAGI2Q86UL8 1455 aa10.42□□□□□ -0.74
VIM-207ENST00000495528 CEBPAP49715 358 aaPredicted RBP10.42□□□□□ -0.74
VIM-207ENST00000495528 PTSQ03393 145 aa10.42□□□□□ -0.74
VIM-207ENST00000495528 EFCAB2Q5VUJ9 269 aa10.42□□□□□ -0.74
VIM-207ENST00000495528 ZDHHC1Q8WTX9 485 aa10.42□□□□□ -0.74
VIM-207ENST00000495528 TIMMDC1Q9NPL8 285 aa10.42□□□□□ -0.74
VIM-207ENST00000495528 ZMYM4Q5VZL5 1548 aa10.42□□□□□ -0.74
VIM-207ENST00000495528 SIGLEC1Q9BZZ2 1709 aa10.41□□□□□ -0.74
VIM-207ENST00000495528 HECW1Q76N89 1606 aa10.41□□□□□ -0.74
VIM-207ENST00000495528 SH3PXD2AQ5TCZ1 1133 aa10.41□□□□□ -0.74
VIM-207ENST00000495528 CLP1Q92989 425 aaKnown RBP10.41□□□□□ -0.74
VIM-207ENST00000495528 USTQ9Y2C2 406 aa10.41□□□□□ -0.74
VIM-207ENST00000495528 CFAP74Q9C0B2 1584 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 WEE1P30291 646 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 NOS2P35228 1153 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 PSMA6P60900 246 aaKnown RBP10.4□□□□□ -0.74
VIM-207ENST00000495528 ZNF295-AS1Q8N0V1 137 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 AFAP1Q8N556 730 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 L3MBTL2Q969R5 705 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 GAS2L1Q99501 681 aaPredicted RBP10.4□□□□□ -0.74
VIM-207ENST00000495528 CDK11AQ9UQ88 783 aaPredicted RBP10.4□□□□□ -0.74
VIM-207ENST00000495528 CHMP3Q9Y3E7 222 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 ATP10AO60312 1499 aa10.4□□□□□ -0.74
VIM-207ENST00000495528 SENP3-EIF4A1A0A087X0R7 540 aa10.39□□□□□ -0.75
VIM-207ENST00000495528 SERTM1A2A2V5 107 aa10.39□□□□□ -0.75
VIM-207ENST00000495528 IGFBP4P22692 258 aa10.39□□□□□ -0.75
VIM-207ENST00000495528 ATP2B4P23634 1241 aa10.39□□□□□ -0.75
VIM-207ENST00000495528 GPAMQ9HCL2 828 aa10.39□□□□□ -0.75
VIM-207ENST00000495528 HCN4Q9Y3Q4 1203 aa10.39□□□□□ -0.75
VIM-207ENST00000495528 TEAD4Q15561 434 aa10.38□□□□□ -0.75
VIM-207ENST00000495528 OCLNQ16625 522 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms