RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 SLC24A1O60721 1099 aa13.89□□□□□ -0.19
PDLIM1-205ENST00000493949 DEFB115Q30KQ5 88 aa13.89□□□□□ -0.19
PDLIM1-205ENST00000493949 EMILIN1Q9Y6C2 1016 aa13.89□□□□□ -0.19
PDLIM1-205ENST00000493949 WDR33Q9C0J8 1336 aaKnown RBP13.89□□□□□ -0.19
PDLIM1-205ENST00000493949 DDNO94850 711 aaPredicted RBP13.88□□□□□ -0.19
PDLIM1-205ENST00000493949 HSP90AB1P08238 724 aaKnown RBP13.88□□□□□ -0.19
PDLIM1-205ENST00000493949 ANP32AP39687 249 aaKnown RBP13.88□□□□□ -0.19
PDLIM1-205ENST00000493949 NFIXQ14938 502 aa13.88□□□□□ -0.19
PDLIM1-205ENST00000493949 USPL1Q5W0Q7 1092 aa13.88□□□□□ -0.19
PDLIM1-205ENST00000493949 TAF1DQ9H5J8 278 aaPredicted RBP13.88□□□□□ -0.19
PDLIM1-205ENST00000493949 COL11A2P13942 1736 aaPredicted RBP13.87□□□□□ -0.19
PDLIM1-205ENST00000493949 H0YIN7 160 aa13.87□□□□□ -0.19
PDLIM1-205ENST00000493949 ZPR1O75312 459 aa13.87□□□□□ -0.19
PDLIM1-205ENST00000493949 INTS5Q6P9B9 1019 aaKnown RBP13.87□□□□□ -0.19
PDLIM1-205ENST00000493949 C2CD5Q86YS7 1000 aa13.87□□□□□ -0.19
PDLIM1-205ENST00000493949 CACNA1SQ13698 1873 aa13.87□□□□□ -0.19
PDLIM1-205ENST00000493949 CASP8AP2Q9UKL3 1982 aa13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 SERPINB2P05120 415 aa13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 PRKAR2AP13861 404 aaKnown RBP13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 RALBP1Q15311 655 aa13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 PDZRN3Q9UPQ7 1066 aa13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 CLEC11AQ9Y240 323 aa13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 SOS1Q07889 1333 aaPredicted RBP13.86□□□□□ -0.19
PDLIM1-205ENST00000493949 SLX4Q8IY92 1834 aa13.85□□□□□ -0.19
PDLIM1-205ENST00000493949 TRPM7Q96QT4 1865 aa13.85□□□□□ -0.19
PDLIM1-205ENST00000493949 PTCD1O75127 700 aaKnown RBP13.85□□□□□ -0.19
PDLIM1-205ENST00000493949 FAM9BQ8IZU0 186 aa13.85□□□□□ -0.19
PDLIM1-205ENST00000493949 NARFQ9UHQ1 456 aa13.85□□□□□ -0.19
PDLIM1-205ENST00000493949 SCN11AQ9UI33 1791 aa13.85□□□□□ -0.19
PDLIM1-205ENST00000493949 CARMIL3Q8ND23 1372 aa13.84□□□□□ -0.19
PDLIM1-205ENST00000493949 LTBP1Q14766 1721 aa13.84□□□□□ -0.19
PDLIM1-205ENST00000493949 TAOK3Q9H2K8 898 aa13.84□□□□□ -0.19
PDLIM1-205ENST00000493949 PPM1GO15355 546 aaPredicted RBP13.83□□□□□ -0.2
PDLIM1-205ENST00000493949 C21orf2O43822 256 aa13.83□□□□□ -0.2
PDLIM1-205ENST00000493949 CABP4P57796 275 aa13.83□□□□□ -0.2
PDLIM1-205ENST00000493949 SPDYE1Q8NFV5 336 aaPredicted RBP13.83□□□□□ -0.2
PDLIM1-205ENST00000493949 BCL2L12Q9HB09 334 aa13.83□□□□□ -0.2
PDLIM1-205ENST00000493949 MS4A1P11836 297 aa13.82□□□□□ -0.2
PDLIM1-205ENST00000493949 CCDC136Q96JN2 1154 aa13.82□□□□□ -0.2
PDLIM1-205ENST00000493949 IPO9Q96P70 1041 aaKnown RBP13.82□□□□□ -0.2
PDLIM1-205ENST00000493949 CARD14Q9BXL6 1004 aa13.82□□□□□ -0.2
PDLIM1-205ENST00000493949 MYBBP1AQ9BQG0 1328 aaKnown RBP13.82□□□□□ -0.2
PDLIM1-205ENST00000493949 CCDC184Q52MB2 194 aa13.81□□□□□ -0.2
PDLIM1-205ENST00000493949 COL15A1P39059 1388 aa13.81□□□□□ -0.2
PDLIM1-205ENST00000493949 TCERG1O14776 1098 aaKnown RBP13.8□□□□□ -0.2
PDLIM1-205ENST00000493949 B4GALNT3Q6L9W6 998 aa13.8□□□□□ -0.2
PDLIM1-205ENST00000493949 CNTROBQ8N137 903 aa13.8□□□□□ -0.2
PDLIM1-205ENST00000493949 BEGAINQ9BUH8 593 aa13.8□□□□□ -0.2
PDLIM1-205ENST00000493949 BRIP1Q9BX63 1249 aa13.8□□□□□ -0.2
PDLIM1-205ENST00000493949 MCOLN1Q9GZU1 580 aa13.8□□□□□ -0.2
PDLIM1-205ENST00000493949 PDE6BP35913 854 aa13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 ECE1P42892 770 aa13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 IRX6P78412 446 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 PLEKHO1Q53GL0 409 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 PNMA8AQ86V59 439 aaPredicted RBP13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 NFATC2IPQ8NCF5 419 aa13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 PNISRQ8TF01 805 aaKnown RBP13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 ZNF622Q969S3 477 aaKnown RBP eCLIP13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 HACL1Q9UJ83 578 aa13.79□□□□□ -0.2
PDLIM1-205ENST00000493949 CYP19A1P11511 503 aaPredicted RBP13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 EPHX2P34913 555 aa13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 EIF4A2Q14240 407 aaKnown RBP13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 AMOTQ4VCS5 1084 aa13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 EAPPQ56P03 285 aaPredicted RBP13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 SOGA3Q5TF21 947 aa13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 DNAJC10Q8IXB1 793 aa13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 CAPNS2Q96L46 248 aa13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 ABT1Q9ULW3 272 aaKnown RBP13.78□□□□□ -0.2
PDLIM1-205ENST00000493949 CA12O43570 354 aa13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 DEKP35659 375 aaKnown RBP13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 MAP2K2P36507 400 aa13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 MTHFSP49914 203 aa13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 SCN7AQ01118 1682 aa13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 RTL5Q5HYW3 569 aaPredicted RBP13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 MAP1SQ66K74 1059 aaPredicted RBP13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 ZNF530Q6P9A1 599 aaPredicted RBP13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 GPR101Q96P66 508 aaPredicted RBP13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 DDX21Q9NR30 783 aaKnown RBP eCLIP13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 POLKQ9UBT6 870 aa13.77□□□□□ -0.21
PDLIM1-205ENST00000493949 PRPF38BQ5VTL8 546 aaKnown RBP13.76□□□□□ -0.21
PDLIM1-205ENST00000493949 CNKSR1Q969H4 720 aa13.76□□□□□ -0.21
PDLIM1-205ENST00000493949 CFAP44Q96MT7 982 aa13.76□□□□□ -0.21
PDLIM1-205ENST00000493949 ZNF541Q9H0D2 1346 aa13.75□□□□□ -0.21
PDLIM1-205ENST00000493949 STYK1Q6J9G0 422 aa13.75□□□□□ -0.21
PDLIM1-205ENST00000493949 ZBTB47Q9UFB7 747 aaPredicted RBP13.75□□□□□ -0.21
PDLIM1-205ENST00000493949 ZBTB1Q9Y2K1 713 aa13.75□□□□□ -0.21
PDLIM1-205ENST00000493949 UBR2Q8IWV8 1755 aa13.75□□□□□ -0.21
PDLIM1-205ENST00000493949 PRR5LQ6MZQ0 368 aa13.74□□□□□ -0.21
PDLIM1-205ENST00000493949 CYP4F22Q6NT55 531 aa13.74□□□□□ -0.21
PDLIM1-205ENST00000493949 PRPF40BQ6NWY9 871 aaKnown RBP13.74□□□□□ -0.21
PDLIM1-205ENST00000493949 C7orf43Q8WVR3 580 aa13.74□□□□□ -0.21
PDLIM1-205ENST00000493949 MRC1P22897 1456 aa13.74□□□□□ -0.21
PDLIM1-205ENST00000493949 C19orf67A6NJJ6 358 aa13.73□□□□□ -0.21
PDLIM1-205ENST00000493949 SRGNP10124 158 aa13.73□□□□□ -0.21
PDLIM1-205ENST00000493949 TNNT2P45379 298 aaPredicted RBP13.73□□□□□ -0.21
PDLIM1-205ENST00000493949 C1orf141Q5JVX7 400 aa13.73□□□□□ -0.21
PDLIM1-205ENST00000493949 FZD9O00144 591 aa13.72□□□□□ -0.21
PDLIM1-205ENST00000493949 TSKSQ9UJT2 592 aa13.72□□□□□ -0.21
PDLIM1-205ENST00000493949 TLL2Q9Y6L7 1015 aa13.72□□□□□ -0.21
PDLIM1-205ENST00000493949 BCORQ6W2J9 1755 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms