RNA–Protein interactions for RNA: ENST00000493683.5

RNF40-203, Transcript of ring finger protein 40, humanhuman

TSL 2

Gene RNF40, Length 5,371 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-203ENST00000493683 IFIT3O14879 490 aaKnown RBP23.21■■□□□ 1.31
RNF40-203ENST00000493683 PIBF1Q8WXW3 757 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 TBC1D32Q96NH3 1257 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 CCDC113Q9H0I3 377 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 GOLIM4O00461 696 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 TRIM27P14373 513 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 KIF5BP33176 963 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 TDRD12Q587J7 1177 aaKnown RBP23.21■■□□□ 1.31
RNF40-203ENST00000493683 STXBP4Q6ZWJ1 553 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 CALML4Q96GE6 196 aa23.21■■□□□ 1.31
RNF40-203ENST00000493683 CCDC175P0C221 793 aa23.2■■□□□ 1.31
RNF40-203ENST00000493683 NLRP5P59047 1200 aa23.2■■□□□ 1.31
RNF40-203ENST00000493683 TCP11L1Q9NUJ3 509 aa23.2■■□□□ 1.31
RNF40-203ENST00000493683 TMOD3Q9NYL9 352 aa23.2■■□□□ 1.31
RNF40-203ENST00000493683 ZNF165P49910 485 aa23.2■■□□□ 1.3
RNF40-203ENST00000493683 CKAP2LQ8IYA6 745 aa23.2■■□□□ 1.3
RNF40-203ENST00000493683 TBC1D9Q6ZT07 1266 aa23.2■■□□□ 1.3
RNF40-203ENST00000493683 TMC6Q7Z403 805 aa23.2■■□□□ 1.3
RNF40-203ENST00000493683 DDX12PQ92771 950 aa23.2■■□□□ 1.3
RNF40-203ENST00000493683 DZIP1Q86YF9 867 aaKnown RBP23.2■■□□□ 1.3
RNF40-203ENST00000493683 C20orf194Q5TEA3 1177 aa23.19■■□□□ 1.3
RNF40-203ENST00000493683 C16orf45Q96MC5 204 aaPredicted RBP23.19■■□□□ 1.3
RNF40-203ENST00000493683 BMP15O95972 392 aa23.19■■□□□ 1.3
RNF40-203ENST00000493683 MTIF2P46199 727 aaKnown RBP23.19■■□□□ 1.3
RNF40-203ENST00000493683 IFI16Q16666 785 aaKnown RBP23.19■■□□□ 1.3
RNF40-203ENST00000493683 CRACR2BQ8N4Y2 399 aaPredicted RBP23.19■■□□□ 1.3
RNF40-203ENST00000493683 ANKRD18BA2A2Z9 1011 aa23.19■■□□□ 1.3
RNF40-203ENST00000493683 IARSP41252 1262 aaKnown RBP23.18■■□□□ 1.3
RNF40-203ENST00000493683 CCDC102BQ68D86 513 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 ARHGAP45Q92619 1136 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 THUMPD2Q9BTF0 503 aaKnown RBP23.18■■□□□ 1.3
RNF40-203ENST00000493683 TTC22Q5TAA0 569 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 SPECC1LQ69YQ0 1117 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 NCOA1Q15788 1441 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 RMND1Q9NWS8 449 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 FLIIQ13045 1269 aa23.18■■□□□ 1.3
RNF40-203ENST00000493683 MAP3K1Q13233 1512 aa23.17■■□□□ 1.3
RNF40-203ENST00000493683 RANBP6O60518 1105 aaKnown RBP23.17■■□□□ 1.3
RNF40-203ENST00000493683 SPINK5Q9NQ38 1064 aaPredicted RBP23.17■■□□□ 1.3
RNF40-203ENST00000493683 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.17■■□□□ 1.3
RNF40-203ENST00000493683 MIS18AQ9NYP9 233 aa23.17■■□□□ 1.3
RNF40-203ENST00000493683 PIK3R4Q99570 1358 aa23.17■■□□□ 1.3
RNF40-203ENST00000493683 HDAC1Q13547 482 aaPredicted RBP23.17■■□□□ 1.3
RNF40-203ENST00000493683 SPECC1Q5M775 1068 aa23.17■■□□□ 1.3
RNF40-203ENST00000493683 CTR9Q6PD62 1173 aa23.17■■□□□ 1.3
RNF40-203ENST00000493683 CCDC8Q9H0W5 538 aaPredicted RBP23.17■■□□□ 1.3
RNF40-203ENST00000493683 TTC21AQ8NDW8 1320 aa23.16■■□□□ 1.3
RNF40-203ENST00000493683 CKAP4Q07065 602 aaKnown RBP23.16■■□□□ 1.3
RNF40-203ENST00000493683 LRSAM1Q6UWE0 723 aa23.16■■□□□ 1.3
RNF40-203ENST00000493683 GOPCQ9HD26 462 aa23.16■■□□□ 1.3
RNF40-203ENST00000493683 CEP135Q66GS9 1140 aa23.16■■□□□ 1.3
RNF40-203ENST00000493683 NEK1Q96PY6 1258 aa23.16■■□□□ 1.3
RNF40-203ENST00000493683 CTAGE1Q96RT6 745 aa23.15■■□□□ 1.3
RNF40-203ENST00000493683 TEX13AQ9BXU3 409 aaPredicted RBP23.15■■□□□ 1.3
RNF40-203ENST00000493683 FAM135AQ9P2D6 1515 aa23.15■■□□□ 1.3
RNF40-203ENST00000493683 SCAF11Q99590 1463 aaKnown RBP23.15■■□□□ 1.3
RNF40-203ENST00000493683 PRKCSHP14314 528 aaPredicted RBP23.15■■□□□ 1.3
RNF40-203ENST00000493683 TRMT1Q9NXH9 659 aaKnown RBP23.15■■□□□ 1.3
RNF40-203ENST00000493683 USP16Q9Y5T5 823 aa23.15■■□□□ 1.3
RNF40-203ENST00000493683 TOPBP1Q92547 1522 aa23.15■■□□□ 1.3
RNF40-203ENST00000493683 CCDC172P0C7W6 258 aa23.15■■□□□ 1.3
RNF40-203ENST00000493683 NF2P35240 595 aa23.15■■□□□ 1.3
RNF40-203ENST00000493683 BBXQ8WY36 941 aaPredicted RBP23.15■■□□□ 1.3
RNF40-203ENST00000493683 CCDC85AQ96PX6 553 aaPredicted RBP23.15■■□□□ 1.3
RNF40-203ENST00000493683 GUCY1B3Q02153 619 aa23.14■■□□□ 1.3
RNF40-203ENST00000493683 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.14■■□□□ 1.36e-7■■■■□ 20.7
RNF40-203ENST00000493683 KIAA0586Q9BVV6 1533 aa23.14■■□□□ 1.3
RNF40-203ENST00000493683 NCOA7Q8NI08 942 aa23.14■■□□□ 1.3
RNF40-203ENST00000493683 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.14■■□□□ 1.29
RNF40-203ENST00000493683 UBA5Q9GZZ9 404 aa23.14■■□□□ 1.29
RNF40-203ENST00000493683 LDHCP07864 332 aa23.14■■□□□ 1.29
RNF40-203ENST00000493683 CCDC40Q4G0X9 1142 aa23.14■■□□□ 1.29
RNF40-203ENST00000493683 RAPGEF3O95398 923 aa23.13■■□□□ 1.29
RNF40-203ENST00000493683 SPAG1Q07617 926 aa23.13■■□□□ 1.29
RNF40-203ENST00000493683 RNF187Q5TA31 235 aaPredicted RBP23.13■■□□□ 1.29
RNF40-203ENST00000493683 HLTFQ14527 1009 aaKnown RBP eCLIP23.13■■□□□ 1.29
RNF40-203ENST00000493683 ORC3Q9UBD5 711 aaPredicted RBP23.13■■□□□ 1.29
RNF40-203ENST00000493683 CPLX3Q8WVH0 158 aa23.13■■□□□ 1.29
RNF40-203ENST00000493683 POLR3GO15318 223 aaPredicted RBP23.13■■□□□ 1.29
RNF40-203ENST00000493683 ZC3H6P61129 1189 aaKnown RBP23.13■■□□□ 1.29
RNF40-203ENST00000493683 TUBB4BP68371 445 aa23.13■■□□□ 1.29
RNF40-203ENST00000493683 CAMSAP2Q08AD1 1489 aa23.13■■□□□ 1.29
RNF40-203ENST00000493683 ZSCAN22P10073 491 aaPredicted RBP23.12■■□□□ 1.29
RNF40-203ENST00000493683 ZPR1O75312 459 aa23.12■■□□□ 1.29
RNF40-203ENST00000493683 ZSCAN23Q3MJ62 389 aa23.12■■□□□ 1.29
RNF40-203ENST00000493683 CCDC96Q2M329 555 aa23.12■■□□□ 1.29
RNF40-203ENST00000493683 TMEM67Q5HYA8 995 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 UBA7P41226 1012 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 CEP112Q8N8E3 955 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 F6X3S4 739 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 METAP2P50579 478 aaKnown RBP eCLIP23.11■■□□□ 1.29
RNF40-203ENST00000493683 PDE4BQ07343 736 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 ANKRD36BQ8N2N9 1353 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
RNF40-203ENST00000493683 PPP4R3BQ5MIZ7 849 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 KCNG4Q8TDN1 519 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 SRRTQ9BXP5 876 aaKnown RBP23.11■■□□□ 1.29
RNF40-203ENST00000493683 PTPN23Q9H3S7 1636 aa23.11■■□□□ 1.29
RNF40-203ENST00000493683 TRMT112Q9UI30 125 aaKnown RBP23.11■■□□□ 1.29
RNF40-203ENST00000493683 RALGAPBQ86X10 1494 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms