RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 EFCAB3Q8N7B9 438 aa14.2□□□□□ -0.14
COL6A3-214ENST00000493608 ZFP91Q96JP5 570 aaPredicted RBP14.2□□□□□ -0.14
COL6A3-214ENST00000493608 CCDC87Q9NVE4 849 aa14.2□□□□□ -0.14
COL6A3-214ENST00000493608 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.2□□□□□ -0.14
COL6A3-214ENST00000493608 C4AP0C0L4 1744 aa14.2□□□□□ -0.14
COL6A3-214ENST00000493608 SIPA1L3O60292 1781 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-214ENST00000493608 ZNF790Q6PG37 636 aa14.19□□□□□ -0.14
COL6A3-214ENST00000493608 NLGN1Q8N2Q7 840 aa14.19□□□□□ -0.14
COL6A3-214ENST00000493608 RTF1Q92541 710 aaKnown RBP14.19□□□□□ -0.14
COL6A3-214ENST00000493608 ZNF496Q96IT1 587 aaPredicted RBP14.19□□□□□ -0.14
COL6A3-214ENST00000493608 ZBTB1Q9Y2K1 713 aa14.19□□□□□ -0.14
COL6A3-214ENST00000493608 BTBD11A6QL63 1104 aa14.18□□□□□ -0.14
COL6A3-214ENST00000493608 CANXP27824 592 aaKnown RBP14.18□□□□□ -0.14
COL6A3-214ENST00000493608 UBR2Q8IWV8 1755 aa14.18□□□□□ -0.14
COL6A3-214ENST00000493608 GOLGB1Q14789 3259 aaKnown RBP14.18□□□□□ -0.14
COL6A3-214ENST00000493608 VSIG10Q8N0Z9 540 aa14.17□□□□□ -0.14
COL6A3-214ENST00000493608 CEMIPQ8WUJ3 1361 aa14.17□□□□□ -0.14
COL6A3-214ENST00000493608 DLG5Q8TDM6 1919 aa14.17□□□□□ -0.14
COL6A3-214ENST00000493608 USP42Q9H9J4 1324 aaKnown RBP14.16□□□□□ -0.14
COL6A3-214ENST00000493608 CICQ96RK0 1608 aaPredicted RBP14.16□□□□□ -0.14
COL6A3-214ENST00000493608 RALBP1Q15311 655 aa14.16□□□□□ -0.14
COL6A3-214ENST00000493608 USPL1Q5W0Q7 1092 aa14.16□□□□□ -0.14
COL6A3-214ENST00000493608 PARP3Q9Y6F1 533 aa14.16□□□□□ -0.14
COL6A3-214ENST00000493608 SOS1Q07889 1333 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-214ENST00000493608 N4BP2Q86UW6 1770 aaPredicted RBP14.15□□□□□ -0.14
COL6A3-214ENST00000493608 HEG1Q9ULI3 1381 aa14.15□□□□□ -0.14
COL6A3-214ENST00000493608 ZPR1O75312 459 aa14.15□□□□□ -0.14
COL6A3-214ENST00000493608 NEFMP07197 916 aa14.15□□□□□ -0.14
COL6A3-214ENST00000493608 FMNL2Q96PY5 1086 aa14.15□□□□□ -0.14
COL6A3-214ENST00000493608 PLEKHF1Q96S99 279 aa14.15□□□□□ -0.14
COL6A3-214ENST00000493608 MIS18AQ9NYP9 233 aa14.15□□□□□ -0.14
COL6A3-214ENST00000493608 A0A0G2JLW4 131 aa14.14□□□□□ -0.15
COL6A3-214ENST00000493608 STARD3NLO95772 234 aa14.14□□□□□ -0.15
COL6A3-214ENST00000493608 A1BGP04217 495 aa14.14□□□□□ -0.15
COL6A3-214ENST00000493608 ZNF330Q9Y3S2 320 aaPredicted RBP14.14□□□□□ -0.15
COL6A3-214ENST00000493608 COL15A1P39059 1388 aa14.13□□□□□ -0.15
COL6A3-214ENST00000493608 PRAMEF22A3QJZ6 481 aa14.13□□□□□ -0.15
COL6A3-214ENST00000493608 DDR1Q08345 913 aa14.13□□□□□ -0.15
COL6A3-214ENST00000493608 USP16Q9Y5T5 823 aa14.13□□□□□ -0.15
COL6A3-214ENST00000493608 HTATSF1O43719 755 aaKnown RBP14.12□□□□□ -0.15
COL6A3-214ENST00000493608 GRIN3BO60391 1043 aa14.12□□□□□ -0.15
COL6A3-214ENST00000493608 PIP4K2AP48426 406 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-214ENST00000493608 TAF7Q15545 349 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-214ENST00000493608 C3orf67Q6ZVT6 689 aa14.12□□□□□ -0.15
COL6A3-214ENST00000493608 ZNF784Q8NCA9 323 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-214ENST00000493608 THUMPD2Q9BTF0 503 aaKnown RBP14.12□□□□□ -0.15
COL6A3-214ENST00000493608 TEX13AQ9BXU3 409 aaPredicted RBP14.12□□□□□ -0.15
COL6A3-214ENST00000493608 NARFQ9UHQ1 456 aa14.12□□□□□ -0.15
COL6A3-214ENST00000493608 KIF13BQ9NQT8 1826 aa14.12□□□□□ -0.15
COL6A3-214ENST00000493608 TM4SF1P30408 202 aa14.11□□□□□ -0.15
COL6A3-214ENST00000493608 EIF5P55010 431 aaKnown RBP14.11□□□□□ -0.15
COL6A3-214ENST00000493608 NFE2L2Q16236 605 aa14.11□□□□□ -0.15
COL6A3-214ENST00000493608 BCL2L12Q9HB09 334 aa14.11□□□□□ -0.15
COL6A3-214ENST00000493608 TBC1D2BQ9UPU7 963 aa14.11□□□□□ -0.15
COL6A3-214ENST00000493608 MYBBP1AQ9BQG0 1328 aaKnown RBP14.11□□□□□ -0.15
COL6A3-214ENST00000493608 POLRMTO00411 1230 aaKnown RBP14.1□□□□□ -0.15
COL6A3-214ENST00000493608 ST18O60284 1047 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 ECM2O94769 699 aaPredicted RBP14.1□□□□□ -0.15
COL6A3-214ENST00000493608 DPEP1P16444 411 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 TGFB2P61812 414 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 NFIXQ14938 502 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 BICDL1Q6ZP65 573 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 PNNQ9H307 717 aaKnown RBP14.1□□□□□ -0.15
COL6A3-214ENST00000493608 BOLA1Q9Y3E2 137 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 MAPK8IP3Q9UPT6 1336 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 KIAA1551Q9HCM1 1747 aa14.1□□□□□ -0.15
COL6A3-214ENST00000493608 AFDNP55196 1824 aaKnown RBP14.09□□□□□ -0.15
COL6A3-214ENST00000493608 CCDC146Q8IYE0 955 aa14.09□□□□□ -0.15
COL6A3-214ENST00000493608 PXDNLA1KZ92 1463 aa14.09□□□□□ -0.15
COL6A3-214ENST00000493608 C10orf71Q711Q0 1435 aa14.08□□□□□ -0.15
COL6A3-214ENST00000493608 SNRPA1P09661 255 aaKnown RBP14.08□□□□□ -0.16
COL6A3-214ENST00000493608 TMEM121BQ9BXQ6 578 aaPredicted RBP14.08□□□□□ -0.16
COL6A3-214ENST00000493608 BCS1LQ9Y276 419 aa14.08□□□□□ -0.16
COL6A3-214ENST00000493608 A0A087WZG4 1122 aa14.07□□□□□ -0.16
COL6A3-214ENST00000493608 KCNA3P22001 575 aa14.07□□□□□ -0.16
COL6A3-214ENST00000493608 CHRNA5P30532 468 aa14.07□□□□□ -0.16
COL6A3-214ENST00000493608 ZEB1P37275 1124 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-214ENST00000493608 IL6STP40189 918 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-214ENST00000493608 RIPK4P57078 832 aa14.07□□□□□ -0.16
COL6A3-214ENST00000493608 NEUROD2Q15784 382 aa14.07□□□□□ -0.16
COL6A3-214ENST00000493608 NPM2Q86SE8 214 aaKnown RBP14.07□□□□□ -0.16
COL6A3-214ENST00000493608 PRKRIP1Q9H875 184 aaPredicted RBP14.07□□□□□ -0.16
COL6A3-214ENST00000493608 RRP7AQ9Y3A4 280 aaKnown RBP14.07□□□□□ -0.16
COL6A3-214ENST00000493608 SERPINB2P05120 415 aa14.06□□□□□ -0.16
COL6A3-214ENST00000493608 TBC1D9BQ66K14 1250 aa14.06□□□□□ -0.16
COL6A3-214ENST00000493608 MS4A4AQ96JQ5 239 aa14.06□□□□□ -0.16
COL6A3-214ENST00000493608 RGL2O15211 777 aa14.05□□□□□ -0.16
COL6A3-214ENST00000493608 TMPOP42166 694 aaKnown RBP14.05□□□□□ -0.16
COL6A3-214ENST00000493608 WDR43Q15061 677 aaKnown RBP eCLIP14.05□□□□□ -0.16
COL6A3-214ENST00000493608 CCDC24Q8N4L8 307 aa14.05□□□□□ -0.16
COL6A3-214ENST00000493608 BRCA1P38398 1863 aaKnown RBP14.04□□□□□ -0.16
COL6A3-214ENST00000493608 NBPF26B4DH59 902 aa14.04□□□□□ -0.16
COL6A3-214ENST00000493608 CAMTA2O94983 1202 aa14.04□□□□□ -0.16
COL6A3-214ENST00000493608 NBPF10Q6P3W6 841 aaKnown RBP14.04□□□□□ -0.16
COL6A3-214ENST00000493608 ARHGAP27Q6ZUM4 889 aa14.04□□□□□ -0.16
COL6A3-214ENST00000493608 DZIP3Q86Y13 1208 aaKnown RBP14.04□□□□□ -0.16
COL6A3-214ENST00000493608 NGEFQ8N5V2 710 aa14.04□□□□□ -0.16
COL6A3-214ENST00000493608 NBPF15Q8N660 670 aa14.04□□□□□ -0.16
COL6A3-214ENST00000493608 TAOK2Q9UL54 1235 aa14.04□□□□□ -0.16
COL6A3-214ENST00000493608 ADAMTS8Q9UP79 889 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms