RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 MBD3O95983 291 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 TPM3P06753 285 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 SKIDA1Q1XH10 827 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 FAM184AQ8NB25 1140 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 GAS2L2Q8NHY3 880 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 MST1RQ04912 1400 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 LMTK3Q96Q04 1460 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 IBSPP21815 317 aaPredicted RBP8.14□□□□□ -1.11
VPS13B-205ENST00000493587 MUM1L1Q5H9M0 696 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 NBPF10Q6P3W6 841 aaKnown RBP8.14□□□□□ -1.11
VPS13B-205ENST00000493587 FBXO38Q6PIJ6 1188 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 ARMCX6Q7L4S7 300 aa8.14□□□□□ -1.11
VPS13B-205ENST00000493587 OVOS2A0A0J9YW53 1432 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 OVOS2Q6IE36 1432 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 ZRSR1Q15695 479 aaKnown RBP8.13□□□□□ -1.11
VPS13B-205ENST00000493587 OTUD6BQ8N6M0 293 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 PPM1EQ8WY54 764 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 PLEKHF1Q96S99 279 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 NUCKS1Q9H1E3 243 aaKnown RBP8.13□□□□□ -1.11
VPS13B-205ENST00000493587 CPSF2Q9P2I0 782 aaKnown RBP8.13□□□□□ -1.11
VPS13B-205ENST00000493587 METP08581 1390 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 ANKRD65E5RJM6 399 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 SYCP1Q15431 976 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 TMEM132EQ6IEE7 984 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 KIAA1524Q8TCG1 905 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 ABCA3Q99758 1704 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 MAGEA9P43362 315 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 RBM5P52756 815 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS13B-205ENST00000493587 GPT2Q8TD30 523 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 SNX21Q969T3 373 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 GLI3P10071 1580 aa8.13□□□□□ -1.11
VPS13B-205ENST00000493587 PLEKHG1Q9ULL1 1385 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 CCDC196A0A1B0GTZ2 297 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 CAND2O75155 1236 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 RABEP1Q15276 862 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 NUTM2DQ5VT03 806 aaPredicted RBP8.12□□□□□ -1.11
VPS13B-205ENST00000493587 NAIF1Q69YI7 327 aaPredicted RBP8.12□□□□□ -1.11
VPS13B-205ENST00000493587 MICALL1Q8N3F8 863 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 ZNF215Q9UL58 517 aaPredicted RBP8.12□□□□□ -1.11
VPS13B-205ENST00000493587 PAXBP1Q9Y5B6 917 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 SCP2P22307 547 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 ZKSCAN8Q15776 578 aaPredicted RBP8.12□□□□□ -1.11
VPS13B-205ENST00000493587 AP1ARQ63HQ0 302 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 CWC22Q9HCG8 908 aaKnown RBP8.12□□□□□ -1.11
VPS13B-205ENST00000493587 ARGLU1Q9NWB6 273 aaPredicted RBP8.12□□□□□ -1.11
VPS13B-205ENST00000493587 CCDC189A1A4V9 331 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 SMC2O95347 1197 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 SMARCE1Q969G3 411 aa8.12□□□□□ -1.11
VPS13B-205ENST00000493587 SHANK3Q9BYB0 1731 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 NFAT5O94916 1531 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 HCLS1P14317 486 aaPredicted RBP8.11□□□□□ -1.11
VPS13B-205ENST00000493587 USP8P40818 1118 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 RBM6P78332 1123 aaKnown RBP8.11□□□□□ -1.11
VPS13B-205ENST00000493587 ST5P78524 1137 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 TMCO3Q6UWJ1 677 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 MMS22LQ6ZRQ5 1243 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 RBM42Q9BTD8 480 aaKnown RBP8.11□□□□□ -1.11
VPS13B-205ENST00000493587 ADAMTS8Q9UP79 889 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 DMRT2Q9Y5R5 561 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 NCAPD2Q15021 1401 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 IPO7O95373 1038 aaKnown RBP8.11□□□□□ -1.11
VPS13B-205ENST00000493587 GBP6Q6ZN66 633 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 CHAMP1Q96JM3 812 aa8.11□□□□□ -1.11
VPS13B-205ENST00000493587 CCDC27Q2M243 656 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 CEP135Q66GS9 1140 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 JMYQ8N9B5 988 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 GOLGA5Q8TBA6 731 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 RGPD5Q99666 1765 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 KIF3CO14782 793 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 RDXP35241 583 aaKnown RBP8.1□□□□□ -1.11
VPS13B-205ENST00000493587 DDIT3P35638 169 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 PDRG1Q9NUG6 133 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 AATKQ6ZMQ8 1374 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 TMEM2Q9UHN6 1383 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 FBXO18Q8NFZ0 1043 aa8.1□□□□□ -1.11
VPS13B-205ENST00000493587 IVLP07476 585 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 SLFN5Q08AF3 891 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 CCDC97Q96F63 343 aaPredicted RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 EIF3CLB5ME19 914 aaKnown RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 ECM2O94769 699 aaPredicted RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 PTGS1P23219 599 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 TRDNQ13061 729 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 UVSSAQ2YD98 709 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 GORABQ5T7V8 394 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 EIF3CQ99613 913 aaKnown RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 NBPF3Q9H094 633 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 ZCCHC17Q9NP64 241 aaKnown RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 NSFL1CQ9UNZ2 370 aaKnown RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 CD2BP2O95400 341 aaKnown RBP8.09□□□□□ -1.11
VPS13B-205ENST00000493587 MAP9Q49MG5 647 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 ITFG2Q969R8 447 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 TRAK1Q9UPV9 953 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 ABCC6O95255 1503 aa8.09□□□□□ -1.11
VPS13B-205ENST00000493587 USP31Q70CQ4 1352 aa8.08□□□□□ -1.12
VPS13B-205ENST00000493587 OAS2P29728 719 aaKnown RBP8.08□□□□□ -1.12
VPS13B-205ENST00000493587 PKP1Q13835 747 aa8.08□□□□□ -1.12
VPS13B-205ENST00000493587 KIF1BPQ96EK5 621 aa8.08□□□□□ -1.12
VPS13B-205ENST00000493587 CCDC34Q96HJ3 373 aa8.08□□□□□ -1.12
VPS13B-205ENST00000493587 EDC4Q6P2E9 1401 aaKnown RBP8.08□□□□□ -1.12
VPS13B-205ENST00000493587 CHGAP10645 457 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms