RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 ZNF428Q96B54 188 aa12.93□□□□□ -0.34
PRPF3-206ENST00000493553 XRN1Q8IZH2 1706 aaKnown RBP12.93□□□□□ -0.34
PRPF3-206ENST00000493553 KIF24Q5T7B8 1368 aa12.93□□□□□ -0.34
PRPF3-206ENST00000493553 TMPOP42166 694 aaKnown RBP12.92□□□□□ -0.34
PRPF3-206ENST00000493553 ITSN1Q15811 1721 aa12.92□□□□□ -0.34
PRPF3-206ENST00000493553 RSBN1LQ6PCB5 846 aaPredicted RBP12.92□□□□□ -0.34
PRPF3-206ENST00000493553 NME9Q86XW9 330 aa12.92□□□□□ -0.34
PRPF3-206ENST00000493553 PLEKHF1Q96S99 279 aa12.92□□□□□ -0.34
PRPF3-206ENST00000493553 USP31Q70CQ4 1352 aa12.92□□□□□ -0.34
PRPF3-206ENST00000493553 C6orf229H3BNL8 230 aa12.91□□□□□ -0.34
PRPF3-206ENST00000493553 NRG2O14511 850 aaPredicted RBP12.91□□□□□ -0.34
PRPF3-206ENST00000493553 B4GALNT3Q6L9W6 998 aa12.91□□□□□ -0.34
PRPF3-206ENST00000493553 AKAP12Q02952 1782 aa12.91□□□□□ -0.34
PRPF3-206ENST00000493553 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.91□□□□□ -0.34
PRPF3-206ENST00000493553 TOPAZ1Q8N9V7 1692 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 NPHP4O75161 1426 aaPredicted RBP12.9□□□□□ -0.34
PRPF3-206ENST00000493553 SENP3-EIF4A1A0A087X0R7 540 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 SPTLC1O15269 473 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 JUNDP17535 347 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 KCNA6P17658 529 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 ZNF697Q5TEC3 545 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 PDZRN3Q9UPQ7 1066 aa12.9□□□□□ -0.34
PRPF3-206ENST00000493553 OVOS2A0A0J9YW53 1432 aa12.89□□□□□ -0.35
PRPF3-206ENST00000493553 OVOS2Q6IE36 1432 aa12.89□□□□□ -0.35
PRPF3-206ENST00000493553 SSH2Q76I76 1423 aa12.89□□□□□ -0.35
PRPF3-206ENST00000493553 SPDYE5A6NIY4 337 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 PPM1GO15355 546 aaPredicted RBP12.88□□□□□ -0.35
PRPF3-206ENST00000493553 CANXP27824 592 aaKnown RBP12.88□□□□□ -0.35
PRPF3-206ENST00000493553 IL13P35225 146 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 RIPK4P57078 832 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 NEUROD2Q15784 382 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 NFE2L2Q16236 605 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 TRIM67Q6ZTA4 783 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 EXOC6Q8TAG9 804 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 LRRC7Q96NW7 1537 aa12.88□□□□□ -0.35
PRPF3-206ENST00000493553 CD2BP2O95400 341 aaKnown RBP12.87□□□□□ -0.35
PRPF3-206ENST00000493553 PRR20EP86478 221 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 PRR20CP86479 221 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 PRR20DP86480 221 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 PRR20BP86481 221 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 PRR20AP86496 221 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 MTMR2Q13614 643 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 RSPH6AQ9H0K4 717 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 ADGRL3Q9HAR2 1447 aa12.87□□□□□ -0.35
PRPF3-206ENST00000493553 TCERG1O14776 1098 aaKnown RBP12.86□□□□□ -0.35
PRPF3-206ENST00000493553 PRKAR2BP31323 418 aa12.86□□□□□ -0.35
PRPF3-206ENST00000493553 RIC3Q7Z5B4 369 aa12.86□□□□□ -0.35
PRPF3-206ENST00000493553 RRP7AQ9Y3A4 280 aaKnown RBP12.86□□□□□ -0.35
PRPF3-206ENST00000493553 IPO8O15397 1037 aaKnown RBP12.85□□□□□ -0.35
PRPF3-206ENST00000493553 ZBTB24O43167 697 aaPredicted RBP12.85□□□□□ -0.35
PRPF3-206ENST00000493553 RARSP54136 660 aaKnown RBP12.85□□□□□ -0.35
PRPF3-206ENST00000493553 GNAI1P63096 354 aa12.85□□□□□ -0.35
PRPF3-206ENST00000493553 MYSM1Q5VVJ2 828 aa12.85□□□□□ -0.35
PRPF3-206ENST00000493553 Q6ZNB5 142 aa12.85□□□□□ -0.35
PRPF3-206ENST00000493553 CENPQQ7L2Z9 268 aaPredicted RBP12.85□□□□□ -0.35
PRPF3-206ENST00000493553 CHMP4BQ9H444 224 aaKnown RBP12.85□□□□□ -0.35
PRPF3-206ENST00000493553 EMILIN1Q9Y6C2 1016 aa12.85□□□□□ -0.35
PRPF3-206ENST00000493553 NCOA3Q9Y6Q9 1424 aa12.85□□□□□ -0.35
PRPF3-206ENST00000493553 SBNO1A3KN83 1393 aa12.84□□□□□ -0.35
PRPF3-206ENST00000493553 FLT4P35916 1363 aa12.84□□□□□ -0.35
PRPF3-206ENST00000493553 CRBNQ96SW2 442 aa12.84□□□□□ -0.35
PRPF3-206ENST00000493553 PCDHB15Q9Y5E8 787 aa12.84□□□□□ -0.35
PRPF3-206ENST00000493553 NRKQ7Z2Y5 1582 aa12.83□□□□□ -0.36
PRPF3-206ENST00000493553 GDF9O60383 454 aa12.83□□□□□ -0.36
PRPF3-206ENST00000493553 TUSC1Q2TAM9 212 aa12.83□□□□□ -0.36
PRPF3-206ENST00000493553 ALDH1L2Q3SY69 923 aa12.83□□□□□ -0.36
PRPF3-206ENST00000493553 PRPF38BQ5VTL8 546 aaKnown RBP12.83□□□□□ -0.36
PRPF3-206ENST00000493553 KDM4CQ9H3R0 1056 aa12.83□□□□□ -0.36
PRPF3-206ENST00000493553 IFT57Q9NWB7 429 aa12.83□□□□□ -0.36
PRPF3-206ENST00000493553 CHD2O14647 1828 aaKnown RBP12.83□□□□□ -0.36
PRPF3-206ENST00000493553 ARHGEF10O15013 1369 aa12.82□□□□□ -0.36
PRPF3-206ENST00000493553 DESI1Q6ICB0 168 aa12.82□□□□□ -0.36
PRPF3-206ENST00000493553 PRR7Q8TB68 274 aa12.82□□□□□ -0.36
PRPF3-206ENST00000493553 KIF16BQ96L93 1317 aa12.82□□□□□ -0.36
PRPF3-206ENST00000493553 FMN2Q9NZ56 1722 aa12.82□□□□□ -0.36
PRPF3-206ENST00000493553 RTL1A6NKG5 1358 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 PLIN1O60240 522 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 ZKSCAN2Q63HK3 967 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 C14orf37Q86TY3 774 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 KCNH5Q8NCM2 988 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 PMFBP1Q8TBY8 1022 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 ZBTB3Q9H5J0 574 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 GPBP1L1Q9HC44 474 aaPredicted RBP12.81□□□□□ -0.36
PRPF3-206ENST00000493553 FANCIQ9NVI1 1328 aa12.81□□□□□ -0.36
PRPF3-206ENST00000493553 MAP2P11137 1827 aaKnown RBP12.81□□□□□ -0.36
PRPF3-206ENST00000493553 AMPHP49418 695 aa12.8□□□□□ -0.36
PRPF3-206ENST00000493553 BRPF1P55201 1214 aaPredicted RBP12.8□□□□□ -0.36
PRPF3-206ENST00000493553 TRIM32Q13049 653 aa12.8□□□□□ -0.36
PRPF3-206ENST00000493553 RRS1Q15050 365 aaKnown RBP12.8□□□□□ -0.36
PRPF3-206ENST00000493553 CCDC24Q8N4L8 307 aa12.8□□□□□ -0.36
PRPF3-206ENST00000493553 NUDT12Q9BQG2 462 aa12.8□□□□□ -0.36
PRPF3-206ENST00000493553 PKD2L1Q9P0L9 805 aa12.8□□□□□ -0.36
PRPF3-206ENST00000493553 NWD1Q149M9 1564 aa12.79□□□□□ -0.36
PRPF3-206ENST00000493553 HTATSF1O43719 755 aaKnown RBP12.79□□□□□ -0.36
PRPF3-206ENST00000493553 EIF4A2Q14240 407 aaKnown RBP12.79□□□□□ -0.36
PRPF3-206ENST00000493553 PTPRNQ16849 979 aa12.79□□□□□ -0.36
PRPF3-206ENST00000493553 LIMD1Q9UGP4 676 aa12.79□□□□□ -0.36
PRPF3-206ENST00000493553 RBM19Q9Y4C8 960 aaKnown RBP12.79□□□□□ -0.36
PRPF3-206ENST00000493553 NALCNQ8IZF0 1738 aa12.79□□□□□ -0.36
PRPF3-206ENST00000493553 BCAR3O75815 825 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms