RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CYP27B1O15528 508 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 EIF2S2P20042 333 aaKnown RBP13.25□□□□□ -0.29
USP4-214ENST00000491791 PDIA6Q15084 440 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 NFKBIBQ15653 356 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 HSP90AB4PQ58FF6 505 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 LINS1Q8NG48 757 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 IL17RAQ96F46 866 aa13.25□□□□□ -0.29
USP4-214ENST00000491791 ERBB4Q15303 1308 aa13.24□□□□□ -0.29
USP4-214ENST00000491791 USP42Q9H9J4 1324 aaKnown RBP13.24□□□□□ -0.29
USP4-214ENST00000491791 DDX58O95786 925 aaKnown RBP13.24□□□□□ -0.29
USP4-214ENST00000491791 SDSP20132 328 aa13.24□□□□□ -0.29
USP4-214ENST00000491791 OTUD7AQ8TE49 926 aaPredicted RBP13.24□□□□□ -0.29
USP4-214ENST00000491791 NECTIN2Q92692 538 aa13.24□□□□□ -0.29
USP4-214ENST00000491791 USP26Q9BXU7 913 aa13.24□□□□□ -0.29
USP4-214ENST00000491791 C5P01031 1676 aa13.24□□□□□ -0.29
USP4-214ENST00000491791 ERVV-2B6SEH9 535 aa13.23□□□□□ -0.29
USP4-214ENST00000491791 DDIT3P35638 169 aa13.23□□□□□ -0.29
USP4-214ENST00000491791 CASC1Q6TDU7 716 aa13.23□□□□□ -0.29
USP4-214ENST00000491791 LRP10Q7Z4F1 713 aa13.23□□□□□ -0.29
USP4-214ENST00000491791 CARD10Q9BWT7 1032 aa13.23□□□□□ -0.29
USP4-214ENST00000491791 LAMB4A4D0S4 1761 aa13.22□□□□□ -0.29
USP4-214ENST00000491791 PAPPAQ13219 1627 aa13.22□□□□□ -0.29
USP4-214ENST00000491791 SMARCA5O60264 1052 aaPredicted RBP13.22□□□□□ -0.29
USP4-214ENST00000491791 SNRPA1P09661 255 aaKnown RBP13.22□□□□□ -0.29
USP4-214ENST00000491791 CSB-PGBD3P0DP91 1061 aa13.22□□□□□ -0.29
USP4-214ENST00000491791 NBR1Q14596 966 aa13.22□□□□□ -0.29
USP4-214ENST00000491791 PPP1R42Q7Z4L9 355 aa13.22□□□□□ -0.29
USP4-214ENST00000491791 UBR2Q8IWV8 1755 aa13.22□□□□□ -0.29
USP4-214ENST00000491791 PCDH11XQ9BZA7 1347 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 PCDH11YQ9BZA8 1340 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 DCAF8L1A6NGE4 600 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 REC8O95072 547 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 NBPF7P0C2Y1 421 aaPredicted RBP13.21□□□□□ -0.29
USP4-214ENST00000491791 MX1P20591 662 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 PROSER3Q2NL68 480 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 NFATC2IPQ8NCF5 419 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 KIF1BPQ96EK5 621 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 FMNL2Q96PY5 1086 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 PPP1R1BQ9UD71 204 aaPredicted RBP13.21□□□□□ -0.29
USP4-214ENST00000491791 CIZ1Q9ULV3 898 aaPredicted RBP13.21□□□□□ -0.29
USP4-214ENST00000491791 MAP3K2Q9Y2U5 619 aa13.21□□□□□ -0.29
USP4-214ENST00000491791 SHANK3Q9BYB0 1731 aa13.2□□□□□ -0.3
USP4-214ENST00000491791 RABEP1Q15276 862 aa13.2□□□□□ -0.3
USP4-214ENST00000491791 DDB1Q16531 1140 aa13.2□□□□□ -0.3
USP4-214ENST00000491791 TOM1L2Q6ZVM7 507 aa13.2□□□□□ -0.3
USP4-214ENST00000491791 HSCBQ8IWL3 235 aa13.2□□□□□ -0.3
USP4-214ENST00000491791 ZCRB1Q8TBF4 217 aaKnown RBP13.2□□□□□ -0.3
USP4-214ENST00000491791 ZNF496Q96IT1 587 aaPredicted RBP13.2□□□□□ -0.3
USP4-214ENST00000491791 EXOC6BQ9Y2D4 811 aa13.2□□□□□ -0.3
USP4-214ENST00000491791 ERC2O15083 957 aa13.19□□□□□ -0.3
USP4-214ENST00000491791 RHPN1Q8TCX5 695 aa13.19□□□□□ -0.3
USP4-214ENST00000491791 SPON1Q9HCB6 807 aa13.19□□□□□ -0.3
USP4-214ENST00000491791 TNS2Q63HR2 1409 aa13.19□□□□□ -0.3
USP4-214ENST00000491791 RREB1Q92766 1687 aa13.18□□□□□ -0.3
USP4-214ENST00000491791 TTC41PQ6P2S7 1318 aa13.18□□□□□ -0.3
USP4-214ENST00000491791 GRM8O00222 908 aa13.18□□□□□ -0.3
USP4-214ENST00000491791 SRGAP3O43295 1099 aa13.18□□□□□ -0.3
USP4-214ENST00000491791 ERC1Q8IUD2 1116 aa13.18□□□□□ -0.3
USP4-214ENST00000491791 METTL22Q9BUU2 404 aaPredicted RBP13.18□□□□□ -0.3
USP4-214ENST00000491791 CDCA7Q9BWT1 371 aaPredicted RBP13.18□□□□□ -0.3
USP4-214ENST00000491791 CHMP5Q9NZZ3 219 aa13.18□□□□□ -0.3
USP4-214ENST00000491791 PRAMEF22A3QJZ6 481 aa13.17□□□□□ -0.3
USP4-214ENST00000491791 ANXA1P04083 346 aa13.17□□□□□ -0.3
USP4-214ENST00000491791 IL2RBP14784 551 aa13.17□□□□□ -0.3
USP4-214ENST00000491791 CABP4P57796 275 aa13.17□□□□□ -0.3
USP4-214ENST00000491791 TTC5Q8N0Z6 440 aa13.17□□□□□ -0.3
USP4-214ENST00000491791 NUP188Q5SRE5 1749 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 PLSCR1O15162 318 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 KCNQ2O43526 872 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 SURF6O75683 361 aaKnown RBP13.16□□□□□ -0.3
USP4-214ENST00000491791 IGKV5-2P06315 115 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 ANAPC15P60006 121 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 SLC39A6Q13433 755 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 KAZALD1Q96I82 304 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 C9orf78Q9NZ63 289 aaPredicted RBP13.16□□□□□ -0.3
USP4-214ENST00000491791 KCPQ6ZWJ8 1503 aa13.16□□□□□ -0.3
USP4-214ENST00000491791 NEURL1BA8MQ27 555 aa13.15□□□□□ -0.3
USP4-214ENST00000491791 K7ELQ4 463 aaPredicted RBP13.15□□□□□ -0.3
USP4-214ENST00000491791 CHMLP26374 656 aa13.15□□□□□ -0.3
USP4-214ENST00000491791 ANKRD13DQ6ZTN6 518 aa13.15□□□□□ -0.3
USP4-214ENST00000491791 PI4K2BQ8TCG2 481 aa13.15□□□□□ -0.3
USP4-214ENST00000491791 ESYT1Q9BSJ8 1104 aa13.15□□□□□ -0.3
USP4-214ENST00000491791 BCL11BQ9C0K0 894 aaPredicted RBP13.15□□□□□ -0.3
USP4-214ENST00000491791 YY1P25490 414 aa13.14□□□□□ -0.31
USP4-214ENST00000491791 DEKP35659 375 aaKnown RBP13.14□□□□□ -0.31
USP4-214ENST00000491791 NEXNQ0ZGT2 675 aa13.14□□□□□ -0.31
USP4-214ENST00000491791 GCKRQ14397 625 aa13.14□□□□□ -0.31
USP4-214ENST00000491791 ARFGEF2Q9Y6D5 1785 aa13.13□□□□□ -0.31
USP4-214ENST00000491791 APBB1O00213 710 aa13.13□□□□□ -0.31
USP4-214ENST00000491791 FRAT2O75474 233 aaPredicted RBP13.13□□□□□ -0.31
USP4-214ENST00000491791 RABL6Q3YEC7 729 aaPredicted RBP13.13□□□□□ -0.31
USP4-214ENST00000491791 COPS6Q7L5N1 327 aa13.13□□□□□ -0.31
USP4-214ENST00000491791 PLBD2Q8NHP8 589 aa13.13□□□□□ -0.31
USP4-214ENST00000491791 XAGE3Q8WTP9 111 aa13.13□□□□□ -0.31
USP4-214ENST00000491791 USP16Q9Y5T5 823 aa13.13□□□□□ -0.31
USP4-214ENST00000491791 RGPD3A6NKT7 1758 aaPredicted RBP13.12□□□□□ -0.31
USP4-214ENST00000491791 RGPD4Q7Z3J3 1758 aa13.12□□□□□ -0.31
USP4-214ENST00000491791 GLRX3O76003 335 aaKnown RBP13.12□□□□□ -0.31
USP4-214ENST00000491791 CWF19L2Q2TBE0 894 aaKnown RBP13.12□□□□□ -0.31
USP4-214ENST00000491791 CLEC17AQ6ZS10 378 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms