RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 TJP1Q07157 1748 aa12.87□□□□□ -0.35
HDAC3-210ENST00000490808 LAMB4A4D0S4 1761 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 PTCD1O75127 700 aaKnown RBP12.86□□□□□ -0.35
HDAC3-210ENST00000490808 IGHDP01880 384 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 FKBP5Q13451 457 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-210ENST00000490808 GPR162Q16538 588 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 KRT24Q2M2I5 525 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 GCC1Q96CN9 775 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 ARXQ96QS3 562 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 TFCP2L1Q9NZI6 479 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 DBF4Q9UBU7 674 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-210ENST00000490808 ZBTB47Q9UFB7 747 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-210ENST00000490808 PCDHB15Q9Y5E8 787 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 ERBB4Q15303 1308 aa12.86□□□□□ -0.35
HDAC3-210ENST00000490808 GNAI3P08754 354 aa12.85□□□□□ -0.35
HDAC3-210ENST00000490808 FLIIQ13045 1269 aa12.85□□□□□ -0.35
HDAC3-210ENST00000490808 SLC39A6Q13433 755 aa12.85□□□□□ -0.35
HDAC3-210ENST00000490808 RPAP2Q8IXW5 612 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-210ENST00000490808 ZNF496Q96IT1 587 aaPredicted RBP12.85□□□□□ -0.35
HDAC3-210ENST00000490808 SGIP1Q9BQI5 828 aa12.85□□□□□ -0.35
HDAC3-210ENST00000490808 RBM19Q9Y4C8 960 aaKnown RBP12.85□□□□□ -0.35
HDAC3-210ENST00000490808 TUBGCP6Q96RT7 1819 aa12.85□□□□□ -0.35
HDAC3-210ENST00000490808 RGL2O15211 777 aa12.84□□□□□ -0.35
HDAC3-210ENST00000490808 DDX58O95786 925 aaKnown RBP12.84□□□□□ -0.35
HDAC3-210ENST00000490808 NPM2Q86SE8 214 aaKnown RBP12.84□□□□□ -0.35
HDAC3-210ENST00000490808 HYPKQ9NX55 129 aa12.84□□□□□ -0.35
HDAC3-210ENST00000490808 RTCBQ9Y3I0 505 aaKnown RBP12.84□□□□□ -0.35
HDAC3-210ENST00000490808 PXDNLA1KZ92 1463 aa12.84□□□□□ -0.35
HDAC3-210ENST00000490808 HMMRO75330 724 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 RPS6KA4O75676 772 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 CYP19A1P11511 503 aaPredicted RBP12.83□□□□□ -0.36
HDAC3-210ENST00000490808 EIF2S2P20042 333 aaKnown RBP12.83□□□□□ -0.36
HDAC3-210ENST00000490808 ITPK1Q13572 414 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 SLC4A10Q6U841 1118 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 LINC00116Q8NCU8 138 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 SLC4A9Q96Q91 983 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 CCDC87Q9NVE4 849 aa12.83□□□□□ -0.36
HDAC3-210ENST00000490808 A0A087WZG4 1122 aa12.82□□□□□ -0.36
HDAC3-210ENST00000490808 CRKLP46109 303 aaKnown RBP12.82□□□□□ -0.36
HDAC3-210ENST00000490808 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
HDAC3-210ENST00000490808 COL24A1Q17RW2 1714 aa12.82□□□□□ -0.36
HDAC3-210ENST00000490808 IL6STP40189 918 aaPredicted RBP12.81□□□□□ -0.36
HDAC3-210ENST00000490808 RGS3P49796 1198 aa12.81□□□□□ -0.36
HDAC3-210ENST00000490808 ZNF827Q17R98 1081 aa12.81□□□□□ -0.36
HDAC3-210ENST00000490808 TRAPPC3LQ5T215 181 aa12.81□□□□□ -0.36
HDAC3-210ENST00000490808 DNAJC10Q8IXB1 793 aa12.81□□□□□ -0.36
HDAC3-210ENST00000490808 SMC5Q8IY18 1101 aa12.81□□□□□ -0.36
HDAC3-210ENST00000490808 GNPATO15228 680 aa12.8□□□□□ -0.36
HDAC3-210ENST00000490808 PDE4AP27815 886 aa12.8□□□□□ -0.36
HDAC3-210ENST00000490808 FAM161AQ3B820 660 aa12.8□□□□□ -0.36
HDAC3-210ENST00000490808 NECTIN2Q92692 538 aa12.8□□□□□ -0.36
HDAC3-210ENST00000490808 PNPLA7Q6ZV29 1317 aa12.8□□□□□ -0.36
HDAC3-210ENST00000490808 EIF5BO60841 1220 aaKnown RBP12.79□□□□□ -0.36
HDAC3-210ENST00000490808 GNAI2P04899 355 aa12.79□□□□□ -0.36
HDAC3-210ENST00000490808 SRCIN1Q9C0H9 1055 aa12.79□□□□□ -0.36
HDAC3-210ENST00000490808 DDX21Q9NR30 783 aaKnown RBP eCLIP12.79□□□□□ -0.36
HDAC3-210ENST00000490808 PDZRN3Q9UPQ7 1066 aa12.79□□□□□ -0.36
HDAC3-210ENST00000490808 N4BP2Q86UW6 1770 aaPredicted RBP12.79□□□□□ -0.36
HDAC3-210ENST00000490808 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.78□□□□□ -0.36
HDAC3-210ENST00000490808 RFC4P35249 363 aa12.78□□□□□ -0.36
HDAC3-210ENST00000490808 EIF5P55010 431 aaKnown RBP12.78□□□□□ -0.36
HDAC3-210ENST00000490808 INTS5Q6P9B9 1019 aaKnown RBP12.78□□□□□ -0.36
HDAC3-210ENST00000490808 G2E3Q7L622 706 aa12.78□□□□□ -0.36
HDAC3-210ENST00000490808 ANKRD44Q8N8A2 993 aa12.78□□□□□ -0.36
HDAC3-210ENST00000490808 BACH2Q9BYV9 841 aa12.78□□□□□ -0.36
HDAC3-210ENST00000490808 CHPF2Q9P2E5 772 aa12.78□□□□□ -0.36
HDAC3-210ENST00000490808 C4AP0C0L4 1744 aa12.77□□□□□ -0.36
HDAC3-210ENST00000490808 KCNQ3O43525 872 aa12.77□□□□□ -0.37
HDAC3-210ENST00000490808 ANP32AP39687 249 aaKnown RBP12.77□□□□□ -0.37
HDAC3-210ENST00000490808 KCNQ4P56696 695 aa12.77□□□□□ -0.37
HDAC3-210ENST00000490808 NLGN1Q8N2Q7 840 aa12.77□□□□□ -0.37
HDAC3-210ENST00000490808 DNAAF4Q8WXU2 420 aa12.77□□□□□ -0.37
HDAC3-210ENST00000490808 COL15A1P39059 1388 aa12.77□□□□□ -0.37
HDAC3-210ENST00000490808 ZPR1O75312 459 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 ALDH1L1O75891 902 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 POLD1P28340 1107 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 NUCB1Q02818 461 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 NEXNQ0ZGT2 675 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 KSR2Q6VAB6 950 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 NARFQ9UHQ1 456 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 ZBTB1Q9Y2K1 713 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 USP16Q9Y5T5 823 aa12.76□□□□□ -0.37
HDAC3-210ENST00000490808 F6X3S4 739 aa12.75□□□□□ -0.37
HDAC3-210ENST00000490808 UBTFL1P0CB47 393 aaPredicted RBP12.75□□□□□ -0.37
HDAC3-210ENST00000490808 CLEC4GQ6UXB4 293 aa12.75□□□□□ -0.37
HDAC3-210ENST00000490808 CHD1LQ86WJ1 897 aa12.75□□□□□ -0.37
HDAC3-210ENST00000490808 COL23A1Q86Y22 540 aaPredicted RBP12.75□□□□□ -0.37
HDAC3-210ENST00000490808 PHAXQ9H814 394 aaKnown RBP12.75□□□□□ -0.37
HDAC3-210ENST00000490808 ATP10DQ9P241 1426 aa12.75□□□□□ -0.37
HDAC3-210ENST00000490808 USP42Q9H9J4 1324 aaKnown RBP12.74□□□□□ -0.37
HDAC3-210ENST00000490808 ANKRD45Q5TZF3 282 aa12.74□□□□□ -0.37
HDAC3-210ENST00000490808 ARHGEF1Q92888 912 aaKnown RBP12.74□□□□□ -0.37
HDAC3-210ENST00000490808 DCTPP1Q9H773 170 aa12.74□□□□□ -0.37
HDAC3-210ENST00000490808 ZNF652Q9Y2D9 606 aa12.74□□□□□ -0.37
HDAC3-210ENST00000490808 IBTKQ9P2D0 1353 aaPredicted RBP12.73□□□□□ -0.37
HDAC3-210ENST00000490808 PI4KAP2A4QPH2 592 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 ERVV-1B6SEH8 477 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 MSH5O43196 834 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 CEP85Q6P2H3 762 aa12.73□□□□□ -0.37
HDAC3-210ENST00000490808 RIC3Q7Z5B4 369 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms