RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 KCNQ3O43525 872 aa13.66□□□□□ -0.22
TTC28-207ENST00000490475 VEGFAP15692 232 aaPredicted RBP13.66□□□□□ -0.22
TTC28-207ENST00000490475 NBPF5PQ86XG9 351 aaPredicted RBP13.66□□□□□ -0.22
TTC28-207ENST00000490475 MASTLQ96GX5 879 aa13.66□□□□□ -0.22
TTC28-207ENST00000490475 PRKRIP1Q9H875 184 aaPredicted RBP13.66□□□□□ -0.22
TTC28-207ENST00000490475 CCDC88AQ3V6T2 1871 aa13.65□□□□□ -0.22
TTC28-207ENST00000490475 DLG5Q8TDM6 1919 aa13.65□□□□□ -0.22
TTC28-207ENST00000490475 SRGNP10124 158 aa13.65□□□□□ -0.22
TTC28-207ENST00000490475 SMC1BQ8NDV3 1235 aa13.65□□□□□ -0.22
TTC28-207ENST00000490475 LAMB4A4D0S4 1761 aa13.65□□□□□ -0.22
TTC28-207ENST00000490475 DICER1Q9UPY3 1922 aaKnown RBP13.64□□□□□ -0.23
TTC28-207ENST00000490475 FER1L6Q2WGJ9 1857 aa13.64□□□□□ -0.23
TTC28-207ENST00000490475 RASSF7Q02833 373 aa13.64□□□□□ -0.23
TTC28-207ENST00000490475 DCTN1Q14203 1278 aa13.64□□□□□ -0.23
TTC28-207ENST00000490475 NFE2L2Q16236 605 aa13.64□□□□□ -0.23
TTC28-207ENST00000490475 TAOK3Q9H2K8 898 aa13.64□□□□□ -0.23
TTC28-207ENST00000490475 RRAGCQ9HB90 399 aa13.64□□□□□ -0.23
TTC28-207ENST00000490475 MYBBP1AQ9BQG0 1328 aaKnown RBP13.64□□□□□ -0.23
TTC28-207ENST00000490475 ARFGEF2Q9Y6D5 1785 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 ERVV-1B6SEH8 477 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 C21orf2O43822 256 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 NPR1P16066 1061 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 LMOD3Q0VAK6 560 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 PLEKHF1Q96S99 279 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 NYXQ9GZU5 481 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 BABAM1Q9NWV8 329 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 NIP7Q9Y221 180 aaKnown RBP eCLIP13.63□□□□□ -0.23
TTC28-207ENST00000490475 ERBB4Q15303 1308 aa13.63□□□□□ -0.23
TTC28-207ENST00000490475 TIAM2Q8IVF5 1701 aa13.62□□□□□ -0.23
TTC28-207ENST00000490475 NFKBIEO00221 500 aa13.62□□□□□ -0.23
TTC28-207ENST00000490475 GTF2E1P29083 439 aaPredicted RBP13.62□□□□□ -0.23
TTC28-207ENST00000490475 ALDH1B1P30837 517 aa13.62□□□□□ -0.23
TTC28-207ENST00000490475 ERFEQ4G0M1 354 aa13.62□□□□□ -0.23
TTC28-207ENST00000490475 PRPF40BQ6NWY9 871 aaKnown RBP13.62□□□□□ -0.23
TTC28-207ENST00000490475 KDM3BQ7LBC6 1761 aa13.62□□□□□ -0.23
TTC28-207ENST00000490475 COL11A2P13942 1736 aaPredicted RBP13.61□□□□□ -0.23
TTC28-207ENST00000490475 PRAMEF22A3QJZ6 481 aa13.61□□□□□ -0.23
TTC28-207ENST00000490475 KLRG2A4D1S0 409 aaPredicted RBP13.61□□□□□ -0.23
TTC28-207ENST00000490475 KIF6Q6ZMV9 814 aa13.61□□□□□ -0.23
TTC28-207ENST00000490475 WDR90Q96KV7 1748 aa13.61□□□□□ -0.23
TTC28-207ENST00000490475 NBPF26B4DH59 902 aa13.6□□□□□ -0.23
TTC28-207ENST00000490475 EIF4A1P60842 406 aaKnown RBP13.6□□□□□ -0.23
TTC28-207ENST00000490475 GRIPAP1Q4V328 841 aa13.6□□□□□ -0.23
TTC28-207ENST00000490475 CCDC93Q567U6 631 aa13.6□□□□□ -0.23
TTC28-207ENST00000490475 NBPF10Q6P3W6 841 aaKnown RBP13.6□□□□□ -0.23
TTC28-207ENST00000490475 RTKN2Q8IZC4 609 aa13.6□□□□□ -0.23
TTC28-207ENST00000490475 NBPF15Q8N660 670 aa13.6□□□□□ -0.23
TTC28-207ENST00000490475 SLX4Q8IY92 1834 aa13.6□□□□□ -0.23
TTC28-207ENST00000490475 PIP4K2AP48426 406 aaPredicted RBP13.59□□□□□ -0.23
TTC28-207ENST00000490475 MAP3K15Q6ZN16 1313 aa13.59□□□□□ -0.23
TTC28-207ENST00000490475 CACNA1SQ13698 1873 aa13.59□□□□□ -0.23
TTC28-207ENST00000490475 IBTKQ9P2D0 1353 aaPredicted RBP13.58□□□□□ -0.23
TTC28-207ENST00000490475 IQCA1LA6NCM1 817 aa13.58□□□□□ -0.24
TTC28-207ENST00000490475 CC2D2BQ6DHV5 1058 aa13.58□□□□□ -0.24
TTC28-207ENST00000490475 CCDC24Q8N4L8 307 aa13.58□□□□□ -0.24
TTC28-207ENST00000490475 DNAJC5GQ8N7S2 189 aa13.58□□□□□ -0.24
TTC28-207ENST00000490475 MIS18AQ9NYP9 233 aa13.58□□□□□ -0.24
TTC28-207ENST00000490475 NUP98P52948 1817 aa13.57□□□□□ -0.24
TTC28-207ENST00000490475 CCDC184Q52MB2 194 aa13.57□□□□□ -0.24
TTC28-207ENST00000490475 IFFO2Q5TF58 517 aa13.57□□□□□ -0.24
TTC28-207ENST00000490475 ZNF219Q9P2Y4 722 aaPredicted RBP13.57□□□□□ -0.24
TTC28-207ENST00000490475 TSPYL4Q9UJ04 414 aa13.57□□□□□ -0.24
TTC28-207ENST00000490475 RIC1Q4ADV7 1423 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 ANP32CO43423 234 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 PRELPP51888 382 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 RIPK4P57078 832 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 FKBP4Q02790 459 aaKnown RBP eCLIP13.56□□□□□ -0.24
TTC28-207ENST00000490475 PARP10Q53GL7 1025 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 PPP1R42Q7Z4L9 355 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 C7orf43Q8WVR3 580 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 KLRG1Q96E93 195 aa13.56□□□□□ -0.24
TTC28-207ENST00000490475 RRP7AQ9Y3A4 280 aaKnown RBP13.56□□□□□ -0.24
TTC28-207ENST00000490475 HLFQ16534 295 aa13.55□□□□□ -0.24
TTC28-207ENST00000490475 CRY2Q49AN0 593 aa13.55□□□□□ -0.24
TTC28-207ENST00000490475 GIGYF2Q6Y7W6 1299 aaKnown RBP13.55□□□□□ -0.24
TTC28-207ENST00000490475 TMX4Q9H1E5 349 aaPredicted RBP13.55□□□□□ -0.24
TTC28-207ENST00000490475 ADAMTS8Q9UP79 889 aa13.55□□□□□ -0.24
TTC28-207ENST00000490475 RNF123Q5XPI4 1314 aa13.55□□□□□ -0.24
TTC28-207ENST00000490475 SCN4AP35499 1836 aa13.55□□□□□ -0.24
TTC28-207ENST00000490475 MYL6BP14649 208 aa13.54□□□□□ -0.24
TTC28-207ENST00000490475 TMPOP42166 694 aaKnown RBP13.54□□□□□ -0.24
TTC28-207ENST00000490475 WDR43Q15061 677 aaKnown RBP eCLIP13.54□□□□□ -0.24
TTC28-207ENST00000490475 HSP90AB3PQ58FF7 597 aa13.54□□□□□ -0.24
TTC28-207ENST00000490475 NGEFQ8N5V2 710 aa13.54□□□□□ -0.24
TTC28-207ENST00000490475 JMYQ8N9B5 988 aa13.54□□□□□ -0.24
TTC28-207ENST00000490475 RPGRQ92834 1020 aaKnown RBP13.54□□□□□ -0.24
TTC28-207ENST00000490475 FAM177BA6PVY3 158 aa13.53□□□□□ -0.24
TTC28-207ENST00000490475 CCDC146Q8IYE0 955 aa13.53□□□□□ -0.24
TTC28-207ENST00000490475 JDP2Q8WYK2 163 aa13.53□□□□□ -0.24
TTC28-207ENST00000490475 L3MBTL3Q96JM7 780 aaPredicted RBP13.53□□□□□ -0.24
TTC28-207ENST00000490475 PSMD1Q99460 953 aa13.53□□□□□ -0.24
TTC28-207ENST00000490475 THUMPD2Q9BTF0 503 aaKnown RBP13.53□□□□□ -0.24
TTC28-207ENST00000490475 HOXA10P31260 410 aaPredicted RBP13.52□□□□□ -0.25
TTC28-207ENST00000490475 CHADLQ6NUI6 762 aa13.52□□□□□ -0.25
TTC28-207ENST00000490475 ZNF34Q8IZ26 560 aa13.52□□□□□ -0.25
TTC28-207ENST00000490475 RBM17Q96I25 401 aaKnown RBP13.52□□□□□ -0.25
TTC28-207ENST00000490475 CRAMP1Q96RY5 1269 aa13.52□□□□□ -0.25
TTC28-207ENST00000490475 POTECB2RU33 542 aa13.51□□□□□ -0.25
TTC28-207ENST00000490475 DDNO94850 711 aaPredicted RBP13.51□□□□□ -0.25
TTC28-207ENST00000490475 TTLL7Q6ZT98 887 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms