RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 UPP2O95045 317 aa9.71□□□□□ -0.86
PRPF40A-210ENST00000489741 POTEAQ6S8J7 498 aa9.71□□□□□ -0.86
PRPF40A-210ENST00000489741 PURBQ96QR8 312 aaKnown RBP9.71□□□□□ -0.86
PRPF40A-210ENST00000489741 TBC1D2BQ9UPU7 963 aa9.71□□□□□ -0.86
PRPF40A-210ENST00000489741 ZNF330Q9Y3S2 320 aaPredicted RBP9.71□□□□□ -0.86
PRPF40A-210ENST00000489741 UNC13BO14795 1591 aa9.71□□□□□ -0.86
PRPF40A-210ENST00000489741 GPR37L1O60883 481 aa9.7□□□□□ -0.86
PRPF40A-210ENST00000489741 ZFP42Q96MM3 310 aa9.7□□□□□ -0.86
PRPF40A-210ENST00000489741 C19orf44Q9H6X5 657 aa9.7□□□□□ -0.86
PRPF40A-210ENST00000489741 C6orf118Q5T5N4 469 aa9.69□□□□□ -0.86
PRPF40A-210ENST00000489741 MEIOBQ8N635 442 aa9.69□□□□□ -0.86
PRPF40A-210ENST00000489741 ZNF775Q96BV0 537 aaPredicted RBP9.69□□□□□ -0.86
PRPF40A-210ENST00000489741 AMOTL2Q9Y2J4 779 aa9.69□□□□□ -0.86
PRPF40A-210ENST00000489741 PTPRUQ92729 1446 aa9.68□□□□□ -0.86
PRPF40A-210ENST00000489741 ITGAEP38570 1179 aa9.68□□□□□ -0.86
PRPF40A-210ENST00000489741 MCM6Q14566 821 aa9.68□□□□□ -0.86
PRPF40A-210ENST00000489741 ZNF592Q92610 1267 aa9.68□□□□□ -0.86
PRPF40A-210ENST00000489741 JCADQ9P266 1359 aa9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 BMP2P12643 396 aa9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 PPARGC1BQ86YN6 1023 aaKnown RBP9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 LINC00528Q8N1L1 170 aa9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 E9PCH4 1651 aa9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 ROBO1Q9Y6N7 1651 aa9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 IQGAP3Q86VI3 1631 aa9.67□□□□□ -0.86
PRPF40A-210ENST00000489741 CHD2O14647 1828 aaKnown RBP9.66□□□□□ -0.86
PRPF40A-210ENST00000489741 ESPNB1AK53 854 aa9.66□□□□□ -0.86
PRPF40A-210ENST00000489741 CBLBQ13191 982 aa9.66□□□□□ -0.86
PRPF40A-210ENST00000489741 TMEM132AQ24JP5 1023 aa9.66□□□□□ -0.86
PRPF40A-210ENST00000489741 GDPD2Q9HCC8 539 aa9.66□□□□□ -0.86
PRPF40A-210ENST00000489741 GCC2Q8IWJ2 1684 aa9.66□□□□□ -0.86
PRPF40A-210ENST00000489741 ERVH48-1M5A8F1 160 aa9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 ATF3P18847 181 aa9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 ABL2P42684 1182 aa9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 MCCD1P59942 119 aaPredicted RBP9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 SEPT12Q8IYM1 358 aa9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 TSEN34Q9BSV6 310 aaKnown RBP9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 TMPRSS4Q9NRS4 437 aa9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 DIP2AQ14689 1571 aa9.65□□□□□ -0.86
PRPF40A-210ENST00000489741 RRBP1Q9P2E9 1410 aaKnown RBP9.65□□□□□ -0.87
PRPF40A-210ENST00000489741 METP08581 1390 aa9.64□□□□□ -0.87
PRPF40A-210ENST00000489741 SPATA31A6Q5VVP1 1343 aa9.64□□□□□ -0.87
PRPF40A-210ENST00000489741 GIGYF1O75420 1035 aaPredicted RBP9.64□□□□□ -0.87
PRPF40A-210ENST00000489741 BRINP3Q76B58 766 aa9.64□□□□□ -0.87
PRPF40A-210ENST00000489741 ZNF784Q8NCA9 323 aaPredicted RBP9.64□□□□□ -0.87
PRPF40A-210ENST00000489741 MYO5BQ9ULV0 1848 aa9.63□□□□□ -0.87
PRPF40A-210ENST00000489741 Q6ZVU0 165 aa9.63□□□□□ -0.87
PRPF40A-210ENST00000489741 C14orf37Q86TY3 774 aa9.63□□□□□ -0.87
PRPF40A-210ENST00000489741 DCCP43146 1447 aa9.63□□□□□ -0.87
PRPF40A-210ENST00000489741 NAIPQ13075 1403 aa9.63□□□□□ -0.87
PRPF40A-210ENST00000489741 IRF5Q13568 498 aa9.62□□□□□ -0.87
PRPF40A-210ENST00000489741 RNF20Q5VTR2 975 aa9.62□□□□□ -0.87
PRPF40A-210ENST00000489741 TRIM52Q96A61 297 aa9.62□□□□□ -0.87
PRPF40A-210ENST00000489741 SETBP1Q9Y6X0 1596 aa9.62□□□□□ -0.87
PRPF40A-210ENST00000489741 TRPM2O94759 1503 aa9.61□□□□□ -0.87
PRPF40A-210ENST00000489741 COL16A1Q07092 1604 aaPredicted RBP9.61□□□□□ -0.87
PRPF40A-210ENST00000489741 EIF4G2P78344 907 aaKnown RBP eCLIP9.61□□□□□ -0.87
PRPF40A-210ENST00000489741 ZNF326Q5BKZ1 582 aaKnown RBP9.61□□□□□ -0.87
PRPF40A-210ENST00000489741 AGBL1Q96MI9 1066 aa9.61□□□□□ -0.87
PRPF40A-210ENST00000489741 CYLDQ9NQC7 956 aa9.61□□□□□ -0.87
PRPF40A-210ENST00000489741 LRP6O75581 1613 aa9.6□□□□□ -0.87
PRPF40A-210ENST00000489741 AHDC1Q5TGY3 1603 aaPredicted RBP9.6□□□□□ -0.87
PRPF40A-210ENST00000489741 MST1RQ04912 1400 aa9.6□□□□□ -0.87
PRPF40A-210ENST00000489741 MAN1A2O60476 641 aa9.6□□□□□ -0.87
PRPF40A-210ENST00000489741 RELBQ01201 579 aa9.6□□□□□ -0.87
PRPF40A-210ENST00000489741 NRXN3Q9Y4C0 1643 aa9.6□□□□□ -0.87
PRPF40A-210ENST00000489741 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 SETD5Q9C0A6 1442 aa9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 SOBPA7XYQ1 873 aa9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 VAC14Q08AM6 782 aa9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 FLIIQ13045 1269 aa9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 ZNF772Q68DY9 489 aaPredicted RBP9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 CCDC125Q86Z20 511 aa9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 PHLPP1O60346 1717 aa9.59□□□□□ -0.87
PRPF40A-210ENST00000489741 RPGRIP1LQ68CZ1 1315 aa9.58□□□□□ -0.88
PRPF40A-210ENST00000489741 LILRA1O75019 489 aa9.58□□□□□ -0.88
PRPF40A-210ENST00000489741 LRRC59Q96AG4 307 aaKnown RBP9.58□□□□□ -0.88
PRPF40A-210ENST00000489741 COG6Q9Y2V7 657 aa9.58□□□□□ -0.88
PRPF40A-210ENST00000489741 PCDHB11Q9Y5F2 797 aa9.58□□□□□ -0.88
PRPF40A-210ENST00000489741 HFM1A2PYH4 1435 aa9.57□□□□□ -0.88
PRPF40A-210ENST00000489741 NEXMIFQ5QGS0 1516 aa9.57□□□□□ -0.88
PRPF40A-210ENST00000489741 XRN1Q8IZH2 1706 aaKnown RBP9.57□□□□□ -0.88
PRPF40A-210ENST00000489741 ADH1AP07327 375 aa9.57□□□□□ -0.88
PRPF40A-210ENST00000489741 WASHC4Q2M389 1173 aa9.57□□□□□ -0.88
PRPF40A-210ENST00000489741 ADGRL3Q9HAR2 1447 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 TTLL8A6PVC2 850 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 SPINT1O43278 529 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 RAD21O60216 631 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 TREML4Q6UXN2 200 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 WWC1Q8IX03 1113 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 DDX17Q92841 729 aaKnown RBP9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 ZNF395Q9H8N7 513 aaPredicted RBP9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 CEP126Q9P2H0 1117 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 CLTCL1P53675 1640 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 ASXL1Q8IXJ9 1541 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 PRAG1Q86YV5 1406 aa9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 SOS2Q07890 1332 aaPredicted RBP9.56□□□□□ -0.88
PRPF40A-210ENST00000489741 ROBO2Q9HCK4 1378 aa9.55□□□□□ -0.88
PRPF40A-210ENST00000489741 TERTO14746 1132 aaKnown RBP9.55□□□□□ -0.88
PRPF40A-210ENST00000489741 WFS1O76024 890 aa9.55□□□□□ -0.88
PRPF40A-210ENST00000489741 ADD1P35611 737 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms